Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_D03
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0204 + 2467657-2467781,2467955-2468044,2469071-2469169,246...    30   2.0  
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589...    30   2.6  
03_01_0140 - 1105005-1105321,1105701-1105776,1106343-1106531           29   3.4  
11_06_0539 + 24762088-24762600                                         28   7.9  

>04_01_0204 +
           2467657-2467781,2467955-2468044,2469071-2469169,
           2469353-2469371,2469965-2470021,2470585-2471265,
           2471639-2471742,2471919-2472057,2472173-2472334,
           2472565-2472681
          Length = 530

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 96  ISARTSAIWWRMGLAQPLQQSLPFPMSPPA 185
           + A++S++   M +  PLQ+  PFP  PPA
Sbjct: 485 LGAKSSSMLLTMVIYDPLQEDSPFPQPPPA 514


>03_02_0143 -
           5888005-5888088,5888818-5888949,5889485-5889634,
           5890540-5890710,5890840-5891007,5891139-5891234,
           5891777-5891839,5891949-5892114,5892207-5892274,
           5892646-5892789,5893111-5893176,5893329-5893520,
           5894567-5894657,5895241-5895329,5895521-5895583,
           5895698-5895823,5895902-5895991,5896059-5896181,
           5896503-5896619,5896704-5896904,5897643-5897723,
           5897897-5897977,5898083-5898184,5898264-5898488,
           5898571-5898726,5898798-5899010,5899306-5899455,
           5900082-5900204,5900299-5900364,5900555-5900620,
           5900686-5900817,5900891-5900965,5901355-5901438,
           5901516-5901668,5901741-5901806,5902044-5902205,
           5902272-5902388,5902495-5902566,5902702-5902761,
           5902869-5902985,5904131-5904430,5904518-5904622,
           5905710-5905775,5905853-5906297,5906399-5906567,
           5906684-5906736,5906819-5906925
          Length = 1981

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +2

Query: 89  SSYQRKDFCDLVEDGLGATAATESSIPNVTTRRXHRG 199
           +S +++ F D+V  G GA + T +S+P  TTR+  +G
Sbjct: 359 ASERKQPFDDVVGTGEGANSFTITSLPQGTTRKHMKG 395


>03_01_0140 - 1105005-1105321,1105701-1105776,1106343-1106531
          Length = 193

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 9/35 (25%), Positives = 23/35 (65%)
 Frame = -3

Query: 160 RLCCSGCAKPILHQIAEVLALIT*SIGMLLQKLTL 56
           R+CCSGC + + H + ++  + +  + + ++K+T+
Sbjct: 70  RMCCSGCERVVKHALMKLRGVDSVEVELEMEKVTV 104


>11_06_0539 + 24762088-24762600
          Length = 170

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 9   DLRTGTAETAIVVTNG-NVNFCSNIPIDQVISARTS 113
           D  TG A TA+ V NG   +F   I ID V++A  S
Sbjct: 41  DTLTGAAPTAVQVVNGPRSHFGDTIVIDDVLTAAAS 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,741,712
Number of Sequences: 37544
Number of extensions: 301327
Number of successful extensions: 971
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)