Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_D02
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.7  
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    27   2.7  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   4.8  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    26   8.4  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 30  LVTVSPHLCYS*CGRMRKRNITVPHDRLDSSSTYDRESPPDSKIVVNLTLHXRHANIR 203
           L+ VSP +      R++     V  D  D++  Y  +   DSKI+ NL L   HA ++
Sbjct: 270 LLGVSPGITVKFLSRLQNYP-NVSKDARDAACLYALKIAKDSKIIKNLDLVKEHAFVK 326


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 206 VRVHRADTGRSSXELDRQTTELER 277
           +R H+   GR+  ELDR+ T+L++
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQ 41


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 116 VESIMRDSDVAFSHSAALAIAQVRRNGNK 30
           +ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 67  IESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 72  RMRKRNITVPHDRLDSSSTYDRESPPDSKIVVNLTLHXRHANIRESES 215
           R + RNI  P  RL  S++  R S    +I    +LH    + +ES S
Sbjct: 96  RAKARNIRNPSQRLRPSTSLARLSNNAPRIPKEASLHENSISSKESPS 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,002,279
Number of Sequences: 5004
Number of extensions: 30181
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)