Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_D02
(900 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 47 3e-07
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 47 3e-07
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 43 4e-06
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 41 1e-05
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 41 1e-05
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 41 1e-05
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 41 1e-05
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 41 1e-05
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 41 1e-05
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 40 2e-05
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 40 2e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 40 4e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 40 4e-05
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 40 4e-05
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 39 7e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 39 7e-05
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 37 2e-04
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 37 2e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 32 0.008
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 26 0.54
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 46.8 bits (106), Expect = 3e-07
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Frame = +3
Query: 66 CGRMRKRNITVPHDRLDSSSTYDRESPPDSK---IVVNLTLHXRHANIRESESTVRILAD 236
CGR KR + ++ L S +T +R +S+ + +TL + ++ E + A
Sbjct: 51 CGRHEKRLL---NELLSSYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAW 106
Query: 237 LQXNWIDKRLSWNAGEWGCXTWL-VSSERLWRPDVVLLNAA 356
L+ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 107 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 46.8 bits (106), Expect = 3e-07
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Frame = +3
Query: 66 CGRMRKRNITVPHDRLDSSSTYDRESPPDSK---IVVNLTLHXRHANIRESESTVRILAD 236
CGR KR + ++ L S +T +R +S+ + +TL + ++ E + A
Sbjct: 51 CGRHEKRLL---NELLSSYNTLERPVANESEPLEVKFGITLQ-QIIDVDEKNQILTTNAW 106
Query: 237 LQXNWIDKRLSWNAGEWGCXTWL-VSSERLWRPDVVLLNAA 356
L+ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 107 LKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 147
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 42.7 bits (96), Expect = 4e-06
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Frame = +3
Query: 114 DSSSTYDRESPPDSK----IVVNLTLHXRHA---NIRESESTVRILADLQXNWIDKRLSW 272
D S Y+R P S +VV L L N+++ T + L+ W D + W
Sbjct: 27 DLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQW 84
Query: 273 NAGEWGCXTWL-VSSERLWRPDVVLLNAAAXXXGV 374
+ E+G T L V SE +W PD+VL N A GV
Sbjct: 85 DPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGV 119
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 195 NIRESESTVRILADLQXNWIDKRLSWNAGEWGCXTWL-VSSERLWRPDVVLLNAA 356
++ E + A L+ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 195 NIRESESTVRILADLQXNWIDKRLSWNAGEWGCXTWL-VSSERLWRPDVVLLNAA 356
++ E + A L+ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 195 NIRESESTVRILADLQXNWIDKRLSWNAGEWGCXTWL-VSSERLWRPDVVLLNAA 356
++ E + A L+ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 195 NIRESESTVRILADLQXNWIDKRLSWNAGEWGCXTWL-VSSERLWRPDVVLLNAA 356
++ E + A L+ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 195 NIRESESTVRILADLQXNWIDKRLSWNAGEWGCXTWL-VSSERLWRPDVVLLNAA 356
++ E + A L+ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 41.1 bits (92), Expect = 1e-05
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 195 NIRESESTVRILADLQXNWIDKRLSWNAGEWGCXTWL-VSSERLWRPDVVLLNAA 356
++ E + A L+ W+D L WN E+G L ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 40.3 bits (90), Expect = 2e-05
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 129 YDRESPPDSKIV--VNLTLHXRHANIRESESTVRILADLQXNWIDKRLSWNAGEWGCXTW 302
YDR+ P+ K ++ L +H N+ E TV L+ W L+W + E+
Sbjct: 48 YDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINS 107
Query: 303 L-VSSERLWRPDVVL 344
+ V S +W PD+V+
Sbjct: 108 IRVKSYEIWVPDIVM 122
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 40.3 bits (90), Expect = 2e-05
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 237 LQXNWIDKRLSWNAGEWGCXTWL-VSSERLWRPDVVLLNAA 356
++ +W D +L W+ E+G L V S+ +WRPD+VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.5 bits (88), Expect = 4e-05
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 237 LQXNWIDKRLSWNAGEWGCXTWL-VSSERLWRPDVVLLNAA 356
++ +W D +L W E+G L V S+ +WRPD+VL N A
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 39.5 bits (88), Expect = 4e-05
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 237 LQXNWIDKRLSWNAGEWGCXTWL-VSSERLWRPDVVLLNAA 356
++ +W D +L W E+G L V S+ +WRPD+VL N A
Sbjct: 81 VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 39.5 bits (88), Expect = 4e-05
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 237 LQXNWIDKRLSWNAGEWGCXTWL-VSSERLWRPDVVLLNAA 356
++ W D +L WN E+G L V SE +W PD+VL N A
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 38.7 bits (86), Expect = 7e-05
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 237 LQXNWIDKRLSWNAGEWG-CXTWLVSSERLWRPDVVLLNAA 356
++ W D +L WN ++G T V SE +W PD+VL N A
Sbjct: 73 VEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA 113
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 38.7 bits (86), Expect = 7e-05
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 159 IVVNLTLHXRHANIRESESTVRILADLQXNWIDKRLSWNAGEW-GCXTWLVSSERLWRPD 335
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 336 VVLLNAA 356
+L N A
Sbjct: 92 TILYNNA 98
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 37.1 bits (82), Expect = 2e-04
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +3
Query: 156 KIVVNLTL-HXRHANIRESESTVRILADLQXNWIDKRLSWNAGEWGCXTWL-VSSERLWR 329
K+ VN L + N+ E ++ L+ W D +L W+ ++G L + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 330 PDVVLLNAA 356
PD+VL N A
Sbjct: 111 PDIVLFNNA 119
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 37.1 bits (82), Expect = 2e-04
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Frame = +3
Query: 102 HDRLDSSSTYDRESPPDSKIVV---NLTLHXRHANIRESESTVRILADLQXNWIDKRLSW 272
+D LD+ + +R +S+ +V LTL + ++ E + L+ W D + W
Sbjct: 29 NDLLDTYNVLERPVGNESEPLVLSFGLTL-MQIIDVDEKNQLLITNLWLKLEWNDVNMRW 87
Query: 273 NAGEWGCXTWL-VSSERLWRPDVVLLNAA 356
N ++G L + RLW+PDV++ N+A
Sbjct: 88 NVSDYGGVRDLRIPPHRLWKPDVLMYNSA 116
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 31.9 bits (69), Expect = 0.008
Identities = 19/79 (24%), Positives = 37/79 (46%)
Frame = +3
Query: 114 DSSSTYDRESPPDSKIVVNLTLHXRHANIRESESTVRILADLQXNWIDKRLSWNAGEWGC 293
D+S D PP + + V++ + I E + T + + +W+D+RL++ G+
Sbjct: 18 DNSVRPDFGGPP-ATVEVDIMVRSM-GPISEVDMTYSMDCYFRQSWVDRRLAFQGGKETL 75
Query: 294 XTWLVSSERLWRPDVVLLN 350
+ R+W+PD N
Sbjct: 76 ALSISMLARIWKPDTYFYN 94
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 25.8 bits (54), Expect = 0.54
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +3
Query: 246 NWIDKRLSWNAGEWGCXTWLVSSERLWRPDVVLLN 350
+W D RLS+ + ER+WRPD N
Sbjct: 92 SWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,544
Number of Sequences: 438
Number of extensions: 2798
Number of successful extensions: 39
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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