Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_C24
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.47 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.3  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    26   5.8  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.6  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   7.6  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   7.6  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 208 VRVHRADTGRSSNELDRQTTELERR 282
           +R H+   GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 131 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 33
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 277 VPTQSFVDPIHLKICQYPHGGL 212
           +P Q+F    H+++C YP GG+
Sbjct: 153 IPQQNFT---HVRLCMYPDGGI 171


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 553 VNHEIHFVTIVHPRTXNLNVQVCMSLGQLSNCIE 452
           V+H I FVT++   +  L + + +S G    CIE
Sbjct: 581 VDHSIVFVTLIGCDSSKLELILALSSGYFQFCIE 614


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -2

Query: 194 HVSNAGSG*LRFWSTGGDSRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 27
           H+S    G  R ++ GG   SY A+   + R    D+ V ++ SAAL +  + R  + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489

Query: 26  ISRRH 12
             RRH
Sbjct: 490 GIRRH 494


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -2

Query: 194 HVSNAGSG*LRFWSTGGDSRSYVARSESIMR----DSDVAFSHSAALAIAQVRRNGNKNN 27
           H+S    G  R ++ GG   SY A+   + R    D+ V ++ SAAL +  + R  + ++
Sbjct: 433 HLSGMTMGMRRMFTQGG---SYSAQERGLCRLEQKDTVVRYAQSAALYLIFLLRRPSADS 489

Query: 26  ISRRH 12
             RRH
Sbjct: 490 GIRRH 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,362
Number of Sequences: 5004
Number of extensions: 59693
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)