Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_C24
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1431 + 27057706-27057900,27058701-27058815,27059123-270591... 32 0.65
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 29 3.5
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 28 8.0
08_02_1498 + 27553449-27553730,27553834-27553946,27554063-275541... 28 8.0
08_02_0813 + 21459776-21461128 28 8.0
04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213... 28 8.0
03_04_0225 + 18953016-18954686 28 8.0
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 28 8.0
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.0
>08_02_1431 +
27057706-27057900,27058701-27058815,27059123-27059170,
27059272-27059524,27059689-27059776,27059883-27059948,
27060335-27060403,27060492-27060597,27060639-27060793,
27061208-27061537
Length = 474
Score = 31.9 bits (69), Expect = 0.65
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 402 NNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFXVLGCTIVTKWI 542
+NG +S DI +S + +N+ + M T + ++ + C VTKWI
Sbjct: 165 SNGDISNGSHHDIFKVVSFRRENFVDSMCTSSEQYDTIVCLSVTKWI 211
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 395 TGAESVVPDGGCSRV*QYHVRPPQAFRGHQPSAAAPFPLRSNSVVCRSNS 246
T + S GGCS + PP AFRG+ + P + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 208 VRVHRADTGRSSNELDRQTTELERRG 285
V+ H + R S EL+RQ ELER+G
Sbjct: 89 VQRHGEELERQSRELERQREELERQG 114
>08_02_1498 +
27553449-27553730,27553834-27553946,27554063-27554129,
27554310-27554402,27554516-27554659,27554860-27554954,
27555120-27555412,27555514-27555632,27555742-27556094,
27556177-27556286,27556403-27556512,27556802-27557671
Length = 882
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +1
Query: 289 GAAALGWCPRNACGGLTWYC*TRLQPPSGT 378
G A+ W P LTWY R PPSGT
Sbjct: 644 GMGAVAWKPGKDNQPLTWYR-RRFDPPSGT 672
>08_02_0813 + 21459776-21461128
Length = 450
Score = 28.3 bits (60), Expect = 8.0
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 279 QGEWGCSTWLVSSERLWRPDVVLLNAAATTVGDYALRARVSNNGSVSWIKRLDISTPISM 458
+G++ C WL + R P LL+ TT R V+ W K+ IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288
Query: 459 QL 464
+L
Sbjct: 289 EL 290
>04_03_1027 -
21820843-21820878,21820974-21821117,21821220-21821358,
21821522-21821652,21823615-21823670,21823964-21824258
Length = 266
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 384 ERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIPPAFQLSRLSIQFI 244
E + R W + RLA+ ++ V R K P+PP L+ L++ +
Sbjct: 47 EAAKRGWSEIRLAIEELSAVDVERRGGKPPPPLPPPPTLTFLALSHL 93
>03_04_0225 + 18953016-18954686
Length = 556
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 300 TWLVSSERLWRPDVVLLNAAATTVGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPN 479
+W+V+ + + D V AAA V Y RA +G+ +W+ D++ IS Q N
Sbjct: 468 SWVVADDEMG--DAVRAAAAAVVVPAY--RALYRRHGTAAWMTPGDVNAMISRQFGGLRN 523
Query: 480 D 482
+
Sbjct: 524 E 524
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 332 PPQAFR-GHQPSAAAPFPLRSNSVVCRSNS 246
PP+ FR GH P AAAP PLR++ S S
Sbjct: 32 PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 393 GRGERSPRRWLQPRLAVPRQASTSVPRTP 307
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,565,155
Number of Sequences: 37544
Number of extensions: 528518
Number of successful extensions: 1536
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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