Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_C21
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 145 6e-36
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 1.0
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 28 1.3
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 26 5.4
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 26 5.4
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 26 7.1
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 26 7.1
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 26 7.1
SPAC6F12.07 |tom20||mitochondrial TOM complex subunit Tom20|Schi... 25 9.4
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 145 bits (352), Expect = 6e-36
Identities = 85/210 (40%), Positives = 122/210 (58%), Gaps = 5/210 (2%)
Frame = +2
Query: 116 NPHIPQYIASAPWYYGTSGPT--LKHQR--PQEDREGQFTKLD-KYYNKGVDVTKVATKF 280
NP+IP++I++APWY L HQR +E G + ++ +Y +G + ATK+
Sbjct: 49 NPYIPKFISTAPWYAQDDDAVERLAHQRIGKKETPSGGRSSIEGSWYVRGKKLGPAATKY 108
Query: 281 RKGACENCGAMTHKKKDCLERPRKIGAKFTNAGIAADEFAQPDLNLSYDGKRDRWNGYDP 460
RKGACENCGAM+HK KDC+ERPRK GA++T I ADE Q D+N+S+D KRDRWNGYD
Sbjct: 109 RKGACENCGAMSHKVKDCMERPRKRGARWTGEDIQADEVIQ-DINVSWDAKRDRWNGYDA 167
Query: 461 EQHKAIIEEYQKVEEAKRELRAKKLEIDPTAXXXXXXXXXXXXXXXXXXXMPGTKVDSKQ 640
+K +IE Y+K++E + + + + +A + G++ DS
Sbjct: 168 TDYKKVIERYEKLDELQNKGEENRDASENSA-----------VKASRNSTVSGSE-DSAS 215
Query: 641 RITVRNLRIREDTAKYLRNLDPNSAYYXPQ 730
IT +LR+RED YLR D + Y P+
Sbjct: 216 -ITTPSLRMREDVVAYLR-ADNKNLQYEPK 243
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 28.7 bits (61), Expect = 1.0
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Frame = -3
Query: 334 AILLLVCHRTTVFTCPFPEFCCYFC-HINSFIV-IFIELCELSLSVLLRPLMFKSRSRSP 161
+I L+ H F C FC H ++ + I +LSLS PL K +
Sbjct: 43 SIPLINTHSNLCLFSNFSHSCFLFCTHPDTLPTSLSINPKKLSLSFSF-PLSQKRPFPNF 101
Query: 160 IVPWSRCNILRYMRIYVFAFMLLPVFISFSFVMAVLFDFAKV 35
+ P++ + + + +F F LL F+SFSF + LF +++
Sbjct: 102 LHPFTGSELSLFRCLLLFFFFLL-FFLSFSFSFSFLFFLSQI 142
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 28.3 bits (60), Expect = 1.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 293 CENCGAMTHKKKDCLER 343
C+NCG + H++ DC ER
Sbjct: 311 CQNCGNVGHRRFDCPER 327
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 281 RKGA-CENCGAMTHKKKDCLERPRKIGAKF 367
R+GA C CG + H +DC ++ G +F
Sbjct: 80 RQGAECYKCGRVGHIARDCRTNGQQSGGRF 109
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 5.4
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -1
Query: 414 FKSGWANSSAAIPALVNF 361
F SGWAN+ ++ ++VN+
Sbjct: 143 FSSGWANAEQSVKSVVNY 160
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 341 RPRKIGAKFTNAGIAADEFAQPDLN 415
RP+K+G K NA I DEF + L+
Sbjct: 252 RPQKLGIKKANADIDFDEFEKAVLS 276
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -1
Query: 402 WANSSAAIPALVNFAPIFL 346
WAN SA + A N++PI L
Sbjct: 259 WANESAIVAAGYNYSPILL 277
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -1
Query: 408 SGWANSSAAIPALVNFAPIF-LGLSKQSFFLCVIAP 304
S ANS++++ AL++ AP++ LG + SF V P
Sbjct: 31 SNSANSASSVAALLSHAPMYGLGQRRPSFLPGVSVP 66
>SPAC6F12.07 |tom20||mitochondrial TOM complex subunit
Tom20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +2
Query: 455 DPEQHKAIIEEYQKVEEAKRE---LRAKKLEI 541
DP K + Y+KV EAK++ L KK +I
Sbjct: 29 DPHFRKTLKRRYKKVHEAKKQEEKLATKKFDI 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,963
Number of Sequences: 5004
Number of extensions: 55907
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -