Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_C21
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157... 195 4e-50
07_03_0964 - 22989470-22989618,22989729-22990476 31 0.79
11_03_0149 + 10787332-10787454,10787776-10788529,10790406-107904... 29 3.2
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 29 3.2
05_03_0577 + 15671570-15672432,15672571-15672785,15672825-156729... 28 7.4
04_04_0769 + 27957562-27957745,27958444-27958511,27958977-279590... 28 7.4
11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715 28 9.8
06_01_0725 + 5305839-5306279,5306816-5307028,5307229-5307675,530... 28 9.8
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722 28 9.8
>08_01_0189 +
1578935-1578950,1579227-1579390,1579493-1579605,
1579850-1580399,1580514-1580813,1581093-1581133,
1581359-1581606,1581983-1582086,1582177-1582323
Length = 560
Score = 195 bits (475), Expect = 4e-50
Identities = 109/239 (45%), Positives = 138/239 (57%), Gaps = 21/239 (8%)
Frame = +2
Query: 101 EGKDINPHIPQYIASAPWYYGTSGPTLKHQRPQEDREGQFTKLDKYYNKGVDVTKVATKF 280
+GK+INPHIPQY++SAPWY P+LKHQR + + +TK +Y++G + + A K+
Sbjct: 36 DGKEINPHIPQYMSSAPWYLNADKPSLKHQRNWKS-DPNYTK--SWYDRGAKLFQ-ANKY 91
Query: 281 RKGACENCGAMTHKKKDCLERPRKIGAKFTNAGIAADEFAQPDLNLSYDGKRDRWNGYDP 460
RKGACENCGAMTH KK C+ERPR +GAK+TN IA DE + L YDGKRDRWNGYDP
Sbjct: 92 RKGACENCGAMTHDKKSCMERPRSVGAKWTNINIAPDEKVE-SFELDYDGKRDRWNGYDP 150
Query: 461 EQHKAIIEEYQKVEEAK----RELRAKKLE----------IDPTAXXXXXXXXXXXXXXX 598
+ +I +Y+ EEA+ +E + KKLE +
Sbjct: 151 STYTRVIADYEAREEARKKYLKEQQLKKLEEKDGEEGDENVASEEEDEEDGLKIDEAKVD 210
Query: 599 XXXXMPGTKVDSKQRI-------TVRNLRIREDTAKYLRNLDPNSAYYXPQDSLYEXQP 754
M KV+ + R TVRNLRIREDTAKYL NLD NSAYY P+ P
Sbjct: 211 ESAQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDP 269
>07_03_0964 - 22989470-22989618,22989729-22990476
Length = 298
Score = 31.5 bits (68), Expect = 0.79
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Frame = +2
Query: 161 GTSGPTLKHQRPQEDREGQFTKLDKYYNKGVDVTKVATKFRKGACENCGAMTHKKKDCLE 340
G+S ++ + P + K D + K KG C CG H KDC E
Sbjct: 170 GSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPE 229
Query: 341 R-PRKIGAKFTNAGIAADEFAQPDLNLSYDGKR 436
R RK + G + + + L DGKR
Sbjct: 230 RKDRKSANMIISEGGGTSGYGR-ERFLLVDGKR 261
>11_03_0149 +
10787332-10787454,10787776-10788529,10790406-10790473,
10791254-10791421
Length = 370
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 293 CENCGAMTHKKKDCLERPRKIGAKFTNAGIAADE 394
C NCG H C ++ ++ G + TNA D+
Sbjct: 136 CFNCGGKGHYSNKCPQKQKQHGVRSTNAAAMKDK 169
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = +2
Query: 161 GTSGPTLKHQRPQEDREGQFTKLDKYYNKGVDVTKVATKFRKGACENCGAMTHKKKDCLE 340
G+S ++ + P + K D + K KG C CG H KDC E
Sbjct: 170 GSSANMVQKKNPHASHNNKKVKPDVKPKAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPE 229
Query: 341 R 343
R
Sbjct: 230 R 230
>05_03_0577 +
15671570-15672432,15672571-15672785,15672825-15672954,
15672990-15673794,15674505-15674715,15674829-15675436
Length = 943
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 293 CENCGAMTHKKKDCLERPRKIGAKFTNAG--IAADEFAQPDLNLSYDG 430
CE CG H + DC E + N G +AA++ ++N+ DG
Sbjct: 260 CEVCGNTGHSENDCSETREEAMYMGNNNGKKLAANDKILENINVKLDG 307
>04_04_0769 +
27957562-27957745,27958444-27958511,27958977-27959058,
27959193-27959239,27959349-27959474,27960439-27960526,
27960922-27961034,27961976-27962038,27962110-27962165,
27962502-27962594,27962991-27963092,27963178-27963226,
27963318-27963386,27963486-27963572
Length = 408
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = -2
Query: 179 E*VPKSHSTMEQMQYTEVYEDLCL------CLHAFTSLHFIFFCNG 60
E P++HS +EQ+ + E E L CL A SLH IF G
Sbjct: 150 EETPENHSLLEQILHLEPLEALAAASKTVDCLKAVHSLHAIFLIAG 195
>11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715
Length = 456
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/84 (19%), Positives = 31/84 (36%)
Frame = +2
Query: 176 TLKHQRPQEDREGQFTKLDKYYNKGVDVTKVATKFRKGACENCGAMTHKKKDCLERPRKI 355
+ K P++ + + + K +K +K R C CG H +DC P +
Sbjct: 321 SFKPATPRDGTKPAASSMSKSQSKDESTAASGSKSRSVECYTCGGRGHYMRDC---PNQK 377
Query: 356 GAKFTNAGIAADEFAQPDLNLSYD 427
T G ++ ++ + D
Sbjct: 378 KVLMTKEGYVSESLSENSEGVQLD 401
>06_01_0725 +
5305839-5306279,5306816-5307028,5307229-5307675,
5307768-5307917,5308185-5308486,5309718-5309758,
5311294-5311968,5312343-5312386
Length = 770
Score = 27.9 bits (59), Expect = 9.8
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = -1
Query: 399 ANSSAAIPALVNFAPIFLGLSKQSFFLCVIAPQFS-HAPFLNFVATFVTSTPLL*YLSSF 223
AN P L++ F+ L +L ++ PQ S + ++A+F+ + PLL L
Sbjct: 362 ANFGLQFPWLLSTKSKFIQLK----YLKLLLPQCSGDMDNIVYLASFLKAAPLLEVLEIH 417
Query: 222 VNCPSLSS*GR*CLRVGPEVP*YHGADAIY*GI*GFMSL 106
N P G LR P+ P Y +IY I GF L
Sbjct: 418 FNVPGYEDAGIPVLRSLPKCP-YKNLKSIY--ITGFRGL 453
>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
Length = 740
Score = 27.9 bits (59), Expect = 9.8
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +2
Query: 326 KDCLERPRKIGAKFTNAGIAADEFAQPDLNLSYDGKRDRWNGYDPEQHKAIIEEYQKVEE 505
KD + G + ++ + DE D +S DG+ NG D + EY+K E
Sbjct: 225 KDNAMESTEEGHERSDCTVCTDEQPDIDGEVSQDGQGSCGNGRDGDDDNPYTVEYEKDGE 284
Query: 506 AKRELRAKKLEI 541
+R L K+ E+
Sbjct: 285 MERVLE-KQAEL 295
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,247,973
Number of Sequences: 37544
Number of extensions: 373454
Number of successful extensions: 1104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -