Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_C21
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    27   0.26 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.26 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.9  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 88  VFISFSFVMAVLFDFAKVKFYS 23
           VF+SF+F+ A +  FA V +++
Sbjct: 280 VFLSFAFIFATIIQFAVVHYFT 301


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 637 AAHHSS*PAYPGGHSQVPAESGP 705
           AA  S+ P+YPGG S  P+ S P
Sbjct: 74  AAITSTSPSYPGGGSSSPSPSSP 96


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 353 IGAKFTNAGIAADEFAQPDLNLSYDGKRDR 442
           IGA  TNA IA D ++   +    DGK  R
Sbjct: 132 IGAAITNAAIAYDRYS--TIARPLDGKLSR 159


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 355 YFSRSLQAILLLVCHRTTVFTCP 287
           YF+R L +   LVC+   V+  P
Sbjct: 206 YFNRGLLSASYLVCYGIWVYFVP 228


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 784 RXQDSGTLGXGLXLIE 737
           R  DSGTLG  L  +E
Sbjct: 444 RENDSGTLGGTLVFVE 459


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 355 YFSRSLQAILLLVCHRTTVFTCP 287
           YF+R L +   LVC+   V+  P
Sbjct: 82  YFNRGLLSASYLVCYGIWVYFVP 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,192
Number of Sequences: 438
Number of extensions: 4454
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)