Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_C20
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   4.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.8  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   5.8  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   7.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   7.7  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   7.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   7.7  

>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 799 RRIKXATSX*TXGXPQASYPCXTFSGTFLXKL 704
           RR+K +      G P+   P   FSG  L +L
Sbjct: 4   RRVKRSDGRGNGGTPEEKRPRTAFSGEQLARL 35


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 512 SRTLPGGE--FDWGGTSVKE*RRCPKASSARTETSRGAKGQKAGLIXM 649
           +  LPG    F+    SVKE RR   A  ++ +  RGA    A +I +
Sbjct: 300 TEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVL 347


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 345 SSLKNHYFHCFITYSVGRK 401
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 512 SRTLPGGE--FDWGGTSVKE*RRCPKASSARTETSRGAKGQKAGLIXM 649
           +  LPG    F+    SVKE RR   A  ++ +  RGA    A +I +
Sbjct: 11  TEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVL 58


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 324 VGDRFARSSLKNHYFHCFI 380
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = -2

Query: 627 CPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHA-EVLNGDERFRHVTTLH 451
           C  +P   S+ + L+   +  +  +   Q NSP  +   P H+    +     R  ++++
Sbjct: 30  CTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMY 89

Query: 450 AWNETPCARRYYRPRTASA 394
            +     A  +++ + A A
Sbjct: 90  PYVSAAAAHHHHQQQQAVA 108


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 324 VGDRFARSSLKNHYFHCFI 380
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 352 SDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSP 242
           +D R   SP   TP+ + Y   +E+ +  S F  D+P
Sbjct: 21  NDKRIYLSPR--TPIKNVYKNNIETKNQLSPFNIDTP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,326
Number of Sequences: 438
Number of extensions: 4805
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)