Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_C19
(830 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 32 0.49
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 31 0.85
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 30 2.0
05_01_0142 - 940421-940701,941262-941574 30 2.6
07_01_0479 + 3606663-3607448 29 3.4
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 29 3.4
02_05_0686 - 30900748-30902167,30903442-30904742 29 4.5
04_01_0530 - 6928528-6929500,6929514-6930964 28 7.9
02_05_0710 - 31115116-31115214,31115747-31115851,31116210-311162... 28 7.9
02_01_0054 - 404464-405152,406087-406618 28 7.9
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 32.3 bits (70), Expect = 0.49
Identities = 23/65 (35%), Positives = 23/65 (35%)
Frame = +2
Query: 599 PGXXGPSSGXXXAGXXXPAXGXXXAXGGXXPXGXXGXXXXAPAGAXXRGGXGPRRXXPPG 778
P PS AG P A P G G P GA RGG GP PG
Sbjct: 333 PPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGP-GPGPPPPPGAAGRGGGGPPPPALPG 391
Query: 779 XGPGA 793
GP A
Sbjct: 392 -GPRA 395
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/61 (29%), Positives = 18/61 (29%)
Frame = -3
Query: 819 GGXXXAXTXAPGPXPGGXXRRGPXPPRXXAPAGAXXXXPXXPXGXXPPXAXXXPXAGHXX 640
G A T AP P P P PP A P P P A P G
Sbjct: 311 GAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGP 370
Query: 639 P 637
P
Sbjct: 371 P 371
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/76 (25%), Positives = 19/76 (25%), Gaps = 1/76 (1%)
Frame = -2
Query: 790 PGXXPGRXXAPXXXPPPXXXPXGGXXXXXPXPPGXXXPXGXAXAXGXXPXPRXX-XAGGG 614
P P P P P G P P P G P P GGG
Sbjct: 324 PPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRGGGG 383
Query: 613 PXXXXXPDXXXXXGXP 566
P P G P
Sbjct: 384 PPPPALPGGPRARGPP 399
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 31.5 bits (68), Expect = 0.85
Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = +2
Query: 587 GIRXPGXXGPSSGXXX-AGXXXPAXGXXXAXGGXXPXGXXGXXXXAPAGAXXRGGXG 754
G PG G G G A G GG P G G +P G RGG G
Sbjct: 1077 GQESPGGFGGRKGPGAFEGREGAAPGSFGGRGGRGPGGFGGRGGGSPGGFGGRGGRG 1133
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/80 (28%), Positives = 30/80 (37%)
Frame = +3
Query: 105 CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNE 284
CG V H L V LP R + A C + +R HR ++ RS
Sbjct: 20 CGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHRR 79
Query: 285 LDRQTTELERRXSGAAALGW 344
R++ L RR LGW
Sbjct: 80 CRRRSPRLWRRSGSGFLLGW 99
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/74 (27%), Positives = 22/74 (29%)
Frame = -3
Query: 774 GGXXRRGPXPPRXXAPAGAXXXXPXXPXGXXPPXAXXXPXAGHXXPAXXXPEEGPXXPGX 595
G +G P P GA P P PP P G P P+ G P
Sbjct: 28 GYPPHQGYPPQGYPPPPGAY---PPPPGAYPPPPGAYPPPPGAYPPQHGYPQPGGYPPPG 84
Query: 594 RXPXXXXXXPXGXP 553
P P G P
Sbjct: 85 GYPQHGGYPPAGYP 98
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.5 bits (63), Expect = 3.4
Identities = 24/81 (29%), Positives = 25/81 (30%)
Frame = -3
Query: 828 RRXGGXXXAXTXAPGPXPGGXXRRGPXPPRXXAPAGAXXXXPXXPXGXXPPXAXXXPXAG 649
+R G A P P PG R PP P G P P G P P
Sbjct: 188 QRPPGVPPAFPGGPPPPPGPFMR---GPP----PMGPPQVRPGMPGGPPPGMRPGMPPPP 240
Query: 648 HXXPAXXXPEEGPXXPGXRXP 586
P P GP PG P
Sbjct: 241 FR-PGMPPPPPGPQQPGQNPP 260
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/63 (26%), Positives = 19/63 (30%)
Frame = -3
Query: 789 PGPXPGGXXRRGPXPPRXXAPAGAXXXXPXXPXGXXPPXAXXXPXAGHXXPAXXXPEEGP 610
P P P + P PP P + P P PP P G P P G
Sbjct: 419 PPPLPSDAFEQPPPPPEHPPPPESTSPPPP-PTSDPPPVPPPPPTTGSFMPIPSAPFAGL 477
Query: 609 XXP 601
P
Sbjct: 478 PVP 480
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/70 (25%), Positives = 19/70 (27%)
Frame = -3
Query: 753 PXPPRXXAPAGAXXXXPXXPXGXXPPXAXXXPXAGHXXPAXXXPEEGPXXPGXRXPXXXX 574
P PP A A P PP P P P +GP P P
Sbjct: 315 PPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKK 374
Query: 573 XXPXGXPXXG 544
P P G
Sbjct: 375 GGPPPPPPKG 384
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Frame = -2
Query: 763 APXXXPPPXXXPXGGXXXXXPXPPGXXXPXGXAXAXGXXPXPRXXXAG--GGP 611
AP PPP P P PP P G P P G GGP
Sbjct: 325 APPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGP 377
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 78 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 218
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_05_0710 -
31115116-31115214,31115747-31115851,31116210-31116260,
31116393-31116494,31116651-31116883,31117306-31117497,
31118142-31118322,31118424-31118623,31119105-31119645
Length = 567
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -3
Query: 804 AXTXAPGPXPGGXXRRGPXPPRXXAPAGAXXXXPXXP 694
A T A P P RRG R APA A P P
Sbjct: 32 ASTAADNPAPAAAGRRGRKSRRHEAPADADGSRPPSP 68
>02_01_0054 - 404464-405152,406087-406618
Length = 406
Score = 28.3 bits (60), Expect = 7.9
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -3
Query: 351 EDTSQVLQPHSPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDYDF 193
E S + P V + +VDP L K +YS G L L ++ S G D
Sbjct: 260 EGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDG 319
Query: 192 GVGGGVPIVRCEERVDHEG 136
G GGG R RV EG
Sbjct: 320 GAGGGNLTARLLPRVRTEG 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,540,991
Number of Sequences: 37544
Number of extensions: 390837
Number of successful extensions: 1159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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