Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_C19
(830 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 3e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 34 0.001
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 28 0.12
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 27 0.28
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 27 0.28
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 26 0.37
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 26 0.37
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 26 0.37
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.49
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.49
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.49
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.49
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.49
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.49
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.49
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 26 0.49
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 0.86
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 25 1.1
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 24 2.0
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 4.6
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 8.0
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 22 8.0
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.3 bits (80), Expect = 3e-04
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +1
Query: 115 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 279
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 280 MNWIDKRLSWNA 315
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 34.3 bits (75), Expect = 0.001
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +1
Query: 121 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 288
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 289 IDKRLSWNAG 318
+D+RL++ G
Sbjct: 62 VDRRLAFQGG 71
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.9 bits (59), Expect = 0.12
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +1
Query: 142 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 300
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 301 LSWN 312
L +N
Sbjct: 95 LRFN 98
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 26.6 bits (56), Expect = 0.28
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 326 GCSTWLVSSERLWRPDXVLLNXA 394
G T V SE +W PD VL N A
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYNNA 113
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 26.6 bits (56), Expect = 0.28
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 320 EWGCSTWL-VSSERLWRPDXVLLNXAXXTVG 409
E+G T L V SE +W PD VL N A G
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYNNADGEYG 118
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.2 bits (55), Expect = 0.37
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 344 VSSERLWRPDXVLLNXA 394
V S+ +WRPD VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.2 bits (55), Expect = 0.37
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 344 VSSERLWRPDXVLLNXA 394
V S+ +WRPD VL N A
Sbjct: 105 VPSDHIWRPDIVLYNNA 121
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 26.2 bits (55), Expect = 0.37
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 344 VSSERLWRPDXVLLNXA 394
V S+ +WRPD VL N A
Sbjct: 101 VPSDHIWRPDIVLYNNA 117
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.49
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 232 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 327
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.2 bits (45), Expect = 6.0
Identities = 6/17 (35%), Positives = 12/17 (70%)
Frame = +2
Query: 344 VSSERLWRPDXVLLNXA 394
++ +LW+PD ++ N A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.49
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 232 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 327
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.2 bits (45), Expect = 6.0
Identities = 6/17 (35%), Positives = 12/17 (70%)
Frame = +2
Query: 344 VSSERLWRPDXVLLNXA 394
++ +LW+PD ++ N A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.49
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 232 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 327
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.2 bits (45), Expect = 6.0
Identities = 6/17 (35%), Positives = 12/17 (70%)
Frame = +2
Query: 344 VSSERLWRPDXVLLNXA 394
++ +LW+PD ++ N A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.49
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 232 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 327
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.2 bits (45), Expect = 6.0
Identities = 6/17 (35%), Positives = 12/17 (70%)
Frame = +2
Query: 344 VSSERLWRPDXVLLNXA 394
++ +LW+PD ++ N A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.49
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 232 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 327
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.2 bits (45), Expect = 6.0
Identities = 6/17 (35%), Positives = 12/17 (70%)
Frame = +2
Query: 344 VSSERLWRPDXVLLNXA 394
++ +LW+PD ++ N A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.49
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 232 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 327
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 22.2 bits (45), Expect = 6.0
Identities = 6/17 (35%), Positives = 12/17 (70%)
Frame = +2
Query: 344 VSSERLWRPDXVLLNXA 394
++ +LW+PD ++ N A
Sbjct: 63 ITPNKLWKPDILMYNSA 79
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.49
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 232 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 327
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 22.2 bits (45), Expect = 6.0
Identities = 6/17 (35%), Positives = 12/17 (70%)
Frame = +2
Query: 344 VSSERLWRPDXVLLNXA 394
++ +LW+PD ++ N A
Sbjct: 131 ITPNKLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 25.8 bits (54), Expect = 0.49
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 232 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 327
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
Score = 22.2 bits (45), Expect = 6.0
Identities = 6/17 (35%), Positives = 12/17 (70%)
Frame = +2
Query: 344 VSSERLWRPDXVLLNXA 394
++ +LW+PD ++ N A
Sbjct: 131 ITPNKLWKPDILMYNSA 147
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.0 bits (52), Expect = 0.86
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 326 GCSTWLVSSERLWRPDXVLLNXA 394
G V SE +W PD VL N A
Sbjct: 104 GVEMLYVPSENIWLPDIVLYNNA 126
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 24.6 bits (51), Expect = 1.1
Identities = 10/30 (33%), Positives = 13/30 (43%)
Frame = +2
Query: 344 VSSERLWRPDXVLLNXAXXTVGDXALRARV 433
V R+WRPD +L N A + V
Sbjct: 82 VPYNRVWRPDTILYNNADPQYSSAVINTNV 111
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 23.8 bits (49), Expect = 2.0
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 193 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 327
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
Score = 23.0 bits (47), Expect = 3.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 353 ERLWRPDXVLLNXA 394
+++W+PD VL N A
Sbjct: 106 DKVWKPDIVLFNNA 119
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.6 bits (46), Expect = 4.6
Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Frame = +1
Query: 73 YXFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NI 237
+ + A+A++ + +++ LL TY+ P +V++ L L ++
Sbjct: 4 WTLMAAIALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDV 63
Query: 238 RESESTVRIQADLQMNWIDKRLSWNAGXVG 327
E + L++ W D + WN G
Sbjct: 64 DEKNQLLITNLWLKLEWNDVNMRWNVSDYG 93
Score = 22.6 bits (46), Expect = 4.6
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 344 VSSERLWRPDXVLLNXA 394
+ RLW+PD ++ N A
Sbjct: 100 IPPHRLWKPDVLMYNSA 116
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.8 bits (44), Expect = 8.0
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2
Query: 353 ERLWRPDXVLLN 388
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.8 bits (44), Expect = 8.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 138 GQ*CCVFAFCRTSYSTSEEKXVTR 67
G+ CC F T Y + K VT+
Sbjct: 602 GEQCCWHCFNCTQYQIRDHKDVTQ 625
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,124
Number of Sequences: 438
Number of extensions: 3735
Number of successful extensions: 33
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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