Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_C17
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    63   3e-10
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    57   2e-08
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    50   2e-06
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    50   2e-06
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    50   3e-06
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    43   2e-04
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    30   2.3  
Z47067-3|CAA87330.2|  446|Caenorhabditis elegans Hypothetical pr...    29   3.0  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 30/71 (42%), Positives = 47/71 (66%)
 Frame = +1

Query: 187 LFSDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAG 366
           ++ D +KAFD++ H+ L+ KL ++     L++ + +FLSNRSFR R+  T S  +  T G
Sbjct: 17  IYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCG 76

Query: 367 VPQGSALSPXI 399
           VPQG+ LSP +
Sbjct: 77  VPQGAVLSPLL 87



 Score = 37.1 bits (82), Expect = 0.015
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +2

Query: 395 LLFSLYINDIPRSPETHLAL--FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRID 568
           LLF +Y+NDI       +A   FADDT +Y S  K       LQ A+  +  W +  ++ 
Sbjct: 86  LLFGIYVNDISSILPEKVACKQFADDTKLYASTPKTE-SENNLQSALDAVVDWTKGSKLT 144

Query: 569 INPTKSAAVLFKRGR 613
           +N +K+  V   + R
Sbjct: 145 LNQSKTVHVTVGKRR 159


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
 Frame = +1

Query: 10  KIYERLLRKRLWNFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGAL 189
           K+ E+ + KR+ N + +       Q GF+ +HS    V ++T  I+ GLN  K  P  A+
Sbjct: 416 KLLEKAILKRIKNSIESPA----HQHGFKPEHSTTTAVIQVTNDIIGGLNM-KNPPERAI 470

Query: 190 FS--DIAKAFDKVWHNGLIYKLYN-MGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLT 360
            +  D+  AFDKV    L   L    G+  ++ L + ++L  R  R   +   S+   L 
Sbjct: 471 MACLDLRAAFDKVPTKKLCNDLMEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLL 530

Query: 361 AGVPQGSALSPXII*F 408
            GVPQGS +SP +  F
Sbjct: 531 GGVPQGSVISPNLFTF 546



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 17/68 (25%), Positives = 37/68 (54%)
 Frame = +2

Query: 398 LFSLYINDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINP 577
           LF+ Y+ D+P   +T L  +ADD +I    +K+     ++Q+ +  + ++ ++  + I+ 
Sbjct: 543 LFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISA 602

Query: 578 TKSAAVLF 601
            KS   +F
Sbjct: 603 EKSTVTVF 610


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 32/107 (29%), Positives = 48/107 (44%)
 Frame = +1

Query: 79  EQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFSDIAKAFDKVWHNGLIYKLYNM 258
           EQ GFR   S +  +H L   + +G  R  QIP   +F D  KAFD V H  +   L   
Sbjct: 655 EQAGFRRSFSTIDHIHSLQRLLEVG--REYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQ 712

Query: 259 GVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPXI 399
           G     + ++++   N +  +     R     +T GV QG  +SP +
Sbjct: 713 GADGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNL 758


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 32/107 (29%), Positives = 48/107 (44%)
 Frame = +1

Query: 79  EQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFSDIAKAFDKVWHNGLIYKLYNM 258
           EQ GFR   S +  +H L   + +G  R  QIP   +F D  KAFD V H  +   L   
Sbjct: 394 EQAGFRRSFSTIDHIHSLQRLLEVG--REYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQ 451

Query: 259 GVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPXI 399
           G     + ++++   N +  +     R     +T GV QG  +SP +
Sbjct: 452 GADGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNL 497


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 32/107 (29%), Positives = 48/107 (44%)
 Frame = +1

Query: 79  EQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFSDIAKAFDKVWHNGLIYKLYNM 258
           EQ GFR   S +  +H L   + +G  R  QIP   +F D  KAFD V H  +   L   
Sbjct: 484 EQAGFRRSFSTIDHIHSLQRLLEVG--REYQIPLTLVFIDFKKAFDTVEHQAIWKSLDEQ 541

Query: 259 GVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPXI 399
           G     + ++++   N +  +     R     +T GV QG  +SP +
Sbjct: 542 GADGAYIDLLKECYKNCTTNF-TPFHRPVAVPVTKGVRQGDPISPNL 587


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = +1

Query: 205 KAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEG-TRSRPRQLTAGVPQGS 381
           KAFD+V H+ L+ KL++ G+         DFLS+R+F  +V          +++GVP+GS
Sbjct: 2   KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGS 61

Query: 382 ALSPXI 399
              P +
Sbjct: 62  VSGPFL 67


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 244 KLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQ-LTAGVPQGSALSPXI 399
           KL   G+        ++FL NR+F  ++    S+    +++GVPQGS   P +
Sbjct: 839 KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLL 891


>Z47067-3|CAA87330.2|  446|Caenorhabditis elegans Hypothetical
           protein C43C3.3 protein.
          Length = 446

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
 Frame = +2

Query: 251 TTWECQTDSCSSYE-TSCRTVRFDIE*RELVLVPVN*P-----PESRKAPRSPRLLFSLY 412
           TT    TD   S + T+  TV   IE  ELV  P++ P     P  ++    P+     +
Sbjct: 317 TTRSAPTDDNGSLDLTNSLTVVSRIESAELVASPISQPTIVDTPSEQRRDPCPKSSNMGF 376

Query: 413 INDIPRSPETHLALFADDTAIYYSCRKMSL 502
           I  I       L LF+   AIY+ C+  S+
Sbjct: 377 IPLIIMGSLASLLLFSAGAAIYFGCKLKSM 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,874,218
Number of Sequences: 27780
Number of extensions: 418529
Number of successful extensions: 1165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)