Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_C16
         (842 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452...    74   1e-13
04_03_0056 - 10369486-10369872                                         30   2.7  
03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477     29   3.5  

>01_06_1613 +
           38643833-38643974,38644054-38644190,38644828-38645207,
           38645487-38645583,38645685-38645972,38646683-38647648
          Length = 669

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 57/190 (30%), Positives = 85/190 (44%), Gaps = 9/190 (4%)
 Frame = +2

Query: 113 KLQGXILQIAPNEQKAFHCKVVCFLQLHNFKEALATLTNAKNSALAADLLFEKAYAXYRV 292
           K+   +L  AP ++ A  CKVV  ++    ++ALA +  A+   L  DL + KAY  YR 
Sbjct: 43  KVADQVLAAAPGDEDAVRCKVVAHIKSDAIEKALAAIRAAER--LPIDLSYCKAYCYYRQ 100

Query: 293 NSPKEALQTVDSAPELTPAXKELRAQILYRLEQYQDCYNLYRDLLKNTTDEYEDERKXXX 472
           N  +EAL  +    E T A  +L +QI YRL +  DC N Y  L K   +  + +     
Sbjct: 101 NKLQEALDLLKGQEE-TSAILQLESQIYYRLGRMNDCMNSYEKLQKFKVESMDLKINIIA 159

Query: 473 XXXXXXXXXXXPTSELPQ---------FDENTYELAYNSGSTLAMRGKYNEALSVLKRAE 625
                        +   Q          D  ++ELAYNS  +L    KY+EA   L  A+
Sbjct: 160 ALVAAGRASEVQATMKAQKVDLSSRALRDTRSFELAYNSACSLIENKKYSEAKEQLDLAK 219

Query: 626 QACSESVIDD 655
           +   E ++ D
Sbjct: 220 RIGKEELMVD 229


>04_03_0056 - 10369486-10369872
          Length = 128

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -3

Query: 669 SSVPPSSITLSEHACSALFKTDKASLYFPRIAKVLPELYANSYVFSSN 526
           SS PP+ +T S H       T+K  L +    KVL EL A  Y + +N
Sbjct: 82  SSTPPAPVTTSRHCADT---TEKVELVY-LDDKVLDELLAEDYSYRNN 125


>03_02_0727 - 10742899-10744375,10744470-10744933,10745412-10745477
          Length = 668

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 308 ALQTVDSAPELTPAXK---ELRAQILYRLEQYQDCYNLYRDLL 427
           AL  VD+A EL+P  +   ELR + L  L +Y+D   + RD +
Sbjct: 49  ALGLVDAALELSPRMESALELRGRALLSLRRYRDVAEMLRDYI 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,720,011
Number of Sequences: 37544
Number of extensions: 297221
Number of successful extensions: 717
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)