Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_C14
(825 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 42 5e-06
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 41 1e-05
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 39 5e-05
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 39 5e-05
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 38 9e-05
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 37 2e-04
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 37 3e-04
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 36 3e-04
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 36 3e-04
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 36 3e-04
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 36 3e-04
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 36 3e-04
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 36 3e-04
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 36 6e-04
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 36 6e-04
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 36 6e-04
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 34 0.001
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 32 0.006
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 31 0.017
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 31 0.017
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 30 0.030
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 29 0.069
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 7.9
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 42.3 bits (95), Expect = 5e-06
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 7/127 (5%)
Frame = +2
Query: 95 IASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA-SIRESESTVR 259
I SA C + D LL+ Y+R P S +VV L L L + + +
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 260 ILAGLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDXXXXXXXXXXXGDYAL-RARVS 433
L+ W D + W+ E+G T L V SE +W PD G + +A +
Sbjct: 69 TNVWLEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILH 128
Query: 434 NNGSVSW 454
G V W
Sbjct: 129 YTGKVLW 135
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 41.1 bits (92), Expect = 1e-05
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAS-IRESESTVRILAGLQMNW 286
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSWNAGEWGCSTWLVSSERLWRPD 370
+D+RL++ G+ + + R+W+PD
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPD 89
Score = 25.0 bits (52), Expect = 0.85
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 462 RLDIXTPISMQLDNWPNDXQTCXFQ 536
RL I M L+N+P D Q C Q
Sbjct: 123 RLTIKAGCPMNLENFPMDTQRCPLQ 147
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 39.1 bits (87), Expect = 5e-05
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Frame = +2
Query: 140 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-SIRESESTVRILAGLQMNWIDKRLS 304
+++ LL++Y+ P + V + L+ + E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 305 WNAGEW-GCSTWLVSSERLWRPD-XXXXXXXXXXXGDYALRARVSNNGS 445
WN E+ G ++ +LW+PD G Y V++NGS
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 39.1 bits (87), Expect = 5e-05
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Frame = +2
Query: 140 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-SIRESESTVRILAGLQMNWIDKRLS 304
+++ LL++Y+ P + V + L+ + E + A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 305 WNAGEW-GCSTWLVSSERLWRPD-XXXXXXXXXXXGDYALRARVSNNGS 445
WN E+ G ++ +LW+PD G Y V++NGS
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 38.3 bits (85), Expect = 9e-05
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 233 IRESESTVRILAGLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD-XXXXXXXXXXXG 406
+ E + A L++ W+D L WN E+ G ++ +LW+PD G
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDG 85
Query: 407 DYALRARVSNNGS 445
Y V++NGS
Sbjct: 86 TYQTSVVVTHNGS 98
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 37.1 bits (82), Expect = 2e-04
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Frame = +2
Query: 86 TCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHLRHA-SIRESES 250
+C +A + + D LL+ Y+R P ++ V + L L +
Sbjct: 6 SCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQ 65
Query: 251 TVRILAGLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 370
+ ++ W D +L WN ++ G T V SE +W PD
Sbjct: 66 IMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPD 106
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 36.7 bits (81), Expect = 3e-04
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Frame = +2
Query: 140 MIDSLLATYDRESPPDSKIVVNLT--LHLRHASIRESESTVRILAG---LQMNWIDKRLS 304
+ D LL+ Y+R P LT L L+ + + E +++ ++ W D +L
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQRWNDYKLK 96
Query: 305 WNAGEWGCSTWL-VSSERLWRPDXXXXXXXXXXXGDYAL----RARVSNNGSVSW 454
WN E+G L V SE +W PD G+Y + +A + G VSW
Sbjct: 97 WNPEEYGGVEMLYVPSENIWLPD---IVLYNNADGNYEVTLMTKATLKYTGDVSW 148
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 36.3 bits (80), Expect = 3e-04
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 233 IRESESTVRILAGLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD-XXXXXXXXXXXG 406
+ E + A L++ W+D L WN E+ G ++ +LW+PD G
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDG 85
Query: 407 DYALRARVSNNGS 445
Y V+++GS
Sbjct: 86 TYQTSVVVTHDGS 98
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 36.3 bits (80), Expect = 3e-04
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 233 IRESESTVRILAGLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD-XXXXXXXXXXXG 406
+ E + A L++ W+D L WN E+ G ++ +LW+PD G
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDG 85
Query: 407 DYALRARVSNNGS 445
Y V+++GS
Sbjct: 86 TYQTSVVVTHDGS 98
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 36.3 bits (80), Expect = 3e-04
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 233 IRESESTVRILAGLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD-XXXXXXXXXXXG 406
+ E + A L++ W+D L WN E+ G ++ +LW+PD G
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDG 85
Query: 407 DYALRARVSNNGS 445
Y V+++GS
Sbjct: 86 TYQTSVVVTHDGS 98
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 36.3 bits (80), Expect = 3e-04
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 233 IRESESTVRILAGLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD-XXXXXXXXXXXG 406
+ E + A L++ W+D L WN E+ G ++ +LW+PD G
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDG 85
Query: 407 DYALRARVSNNGS 445
Y V+++GS
Sbjct: 86 TYQTSVVVTHDGS 98
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 36.3 bits (80), Expect = 3e-04
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 233 IRESESTVRILAGLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD-XXXXXXXXXXXG 406
+ E + A L++ W+D L WN E+ G ++ +LW+PD G
Sbjct: 26 VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFDG 85
Query: 407 DYALRARVSNNGS 445
Y V+++GS
Sbjct: 86 TYQTSVVVTHDGS 98
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 36.3 bits (80), Expect = 3e-04
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Frame = +2
Query: 113 CENATSLSLMIDSLLATYDRESPPDSKIVVNLT--LHLRHASIRESESTVRILAG---LQ 277
C + D LL+ Y++ P + LT + L+ + + + +I+ ++
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNLWVE 78
Query: 278 MNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDXXXXXXXXXXXG-DYALRARVSNNGSVS 451
+W D +L W+ E+G L V S+ +WRPD A +A ++ G V
Sbjct: 79 QSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVE 138
Query: 452 W 454
W
Sbjct: 139 W 139
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 35.5 bits (78), Expect = 6e-04
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Frame = +2
Query: 140 MIDSLLATYDRESPP--DSKIVVNLTLHLRHASIRESESTVRILAG---LQMNWIDKRLS 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWGCSTWL-VSSERLWRPDXXXXXXXXXXXG-DYALRARVSNNGSVSW 454
W E+G L V S+ +WRPD A +A + + G V W
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 35.5 bits (78), Expect = 6e-04
Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Frame = +2
Query: 194 IVVNLTLHLRHASIRESESTVRILAGLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 370
+V L+LH + E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 371 XXXXXXXXXXXGDYALRAR--VSNNGSVSW 454
+ VS+ G V W
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVW 121
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 35.5 bits (78), Expect = 6e-04
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 7/125 (5%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLLATYD-RESPPDSK---IVVNLTLHLRHA-SIRESESTV 256
A+A++ + +++ LL TY+ E P ++ +V++ L L + E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 257 RILAGLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPD-XXXXXXXXXXXGDYALRARV 430
L++ W D + WN ++G L + RLW+PD G Y V
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVV 130
Query: 431 SNNGS 445
NNG+
Sbjct: 131 KNNGT 135
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 34.3 bits (75), Expect = 0.001
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +2
Query: 140 MIDSLLATYDRESPP--DSKIVVNLTLHLRHASIRESESTVRILAG---LQMNWIDKRLS 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I+ ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWGCSTWL-VSSERLWRPD 370
W E+G L V S+ +WRPD
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPD 114
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 32.3 bits (70), Expect = 0.006
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = +2
Query: 116 ENATSLSLMIDSLLATYDRESPPDS--KIVVNLTLHL--RHASIRESESTVRILAGLQMN 283
++ T+L + L YD P S +I N+T+ L + + S + + + + +
Sbjct: 39 DHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLMEFDDWTSVMELHSWMTLM 98
Query: 284 WIDKRLSWNAGEW-GCSTWLVSSERLWRPD 370
W D LSW ++ G + V S+ +W PD
Sbjct: 99 WTDSHLSWKPSDFDGINYIYVKSDDIWVPD 128
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 30.7 bits (66), Expect = 0.017
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +2
Query: 128 SLSLMIDSLLATYDRESPPD----SKIVVNLTLHLRHAS-IRESESTVRILAGLQMNWID 292
++++++++LL Y+ P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 293 KRLSWNAGEWGCSTWLVSSERLWRPD 370
RLS+ S + ER+WRPD
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPD 121
Score = 23.8 bits (49), Expect = 2.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 462 RLDIXTPISMQLDNWPNDXQTC 527
RL I M+L N+P D Q+C
Sbjct: 155 RLTIKAKCPMELRNFPMDRQSC 176
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 30.7 bits (66), Expect = 0.017
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Frame = +2
Query: 191 KIVVNLTL-HLRHASIRESESTVRILAGLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWR 364
K+ VN L ++ ++ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 365 PDXXXXXXXXXXXGDYALRAR----VSNNGSVSW 454
PD G+Y +R + + NG V W
Sbjct: 111 PD---IVLFNNADGNYEVRYKSNVLIYPNGDVLW 141
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 29.9 bits (64), Expect = 0.030
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHASIRESESTVRILAGLQMNW 286
N ++S ++DS +YD+ P+ + V +T++ L +S+ E + + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFW 67
Query: 287 IDKRLSWNAGEWGCSTWLVSSE---RLWRPD 370
D RL++ G T V SE +W PD
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPD 97
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 28.7 bits (61), Expect = 0.069
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHASIRESESTVRILAGLQMNW 286
N ++S ++DS +YD+ P+ + V +T++ L +S+ E + + W
Sbjct: 8 NDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSVSEVLMDFTLDFYFRQFW 67
Query: 287 IDKRLSWNAGEWGCSTWLVSSE---RLWRPD 370
D RL++ G T V SE +W PD
Sbjct: 68 TDPRLAFKK-RTGVETLSVGSEFIKNIWVPD 97
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 7.9
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 337 PSAAAPFPCVPTQS 296
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,476
Number of Sequences: 438
Number of extensions: 4028
Number of successful extensions: 44
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -