Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_C07
(827 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.48
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 32 0.64
07_03_0890 - 22332768-22333382 31 1.1
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.4
06_03_1445 - 30209354-30209396,30209798-30209875,30210220-302102... 29 3.4
06_03_1433 - 30129184-30129226,30129628-30129705,30130050-301301... 29 3.4
06_03_1416 + 30027066-30027663,30027739-30027848,30027927-300280... 29 3.4
07_03_1747 + 29188568-29188715,29188793-29189541 29 4.5
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 29 4.5
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 29 6.0
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 28 7.9
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 7.9
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 7.9
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 7.9
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.48
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 309 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 145
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 31.9 bits (69), Expect = 0.64
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 207 VQVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 323
VQ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>07_03_0890 - 22332768-22333382
Length = 204
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -3
Query: 693 GGPPXXXXRXXPXAXXPPPPXXRLXPRXAXXPXP 592
G PP P PPPP R P A P P
Sbjct: 73 GSPPPPPAEATPPPPPPPPPPERAVPEAADTPPP 106
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 222 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 133
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>06_03_1445 -
30209354-30209396,30209798-30209875,30210220-30210285,
30212275-30212322,30212408-30212571,30212726-30213581,
30213673-30213786,30213853-30213996,30214075-30214304,
30214584-30214724,30214810-30214887,30214972-30215053,
30215130-30215184,30215284-30215407,30215548-30215641,
30215718-30215794,30215873-30215982,30216058-30216655
Length = 1033
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = -3
Query: 699 PGGGPPXXXXRXXPXAXXPPPPXXRLXPRXAXXP 598
P G PP R P PPP R+ PR P
Sbjct: 20 PRGDPPPGRQRQVPPRGDPPPGRQRVPPRLLITP 53
>06_03_1433 -
30129184-30129226,30129628-30129705,30130050-30130115,
30132105-30132152,30132238-30132401,30132556-30133411,
30133503-30133616,30133683-30133826,30133905-30134134,
30134414-30134554,30134640-30134717,30134802-30134883,
30134958-30135012,30135112-30135235,30135376-30135469,
30135546-30135622,30135701-30135810,30135886-30136483
Length = 1033
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = -3
Query: 699 PGGGPPXXXXRXXPXAXXPPPPXXRLXPRXAXXP 598
P G PP R P PPP R+ PR P
Sbjct: 20 PRGDPPPGRQRQVPPRGDPPPGRQRVPPRLLITP 53
>06_03_1416 +
30027066-30027663,30027739-30027848,30027927-30028003,
30028080-30028173,30028314-30028437,30028537-30028591,
30028666-30028747,30028832-30028909,30028995-30029135,
30029416-30029645,30029724-30029867,30029934-30030047,
30030139-30030994,30031149-30031312,30031398-30031445,
30033435-30033500,30033845-30033922,30034324-30034366
Length = 1033
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = -3
Query: 699 PGGGPPXXXXRXXPXAXXPPPPXXRLXPRXAXXP 598
P G PP R P PPP R+ PR P
Sbjct: 20 PRGDPPPGRQRQVPPRGDPPPGRQRVPPRLLITP 53
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 362 PPPGTTLSAPVYLITAPSPA*RAWTLALQFLCSXTIGPTTCXLAXSGSXLG 514
PPP TT++ V L P+ A + QF+C+ TTC + S S G
Sbjct: 213 PPPTTTMAQHVVL---PTAAASCHQMQDQFVCARAAETTTCCWSESESLPG 260
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 292 CSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSCIKSLDISTPISMQS 462
CS++L R+W +++ + LRA +N S + ++D+STP ++ +
Sbjct: 137 CSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPATLDN 190
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = -3
Query: 774 GGAGAXXXXXXXXRSXAXGGXXXGXPGGGPPXXXXRXXPXAXXP 643
GG G GG PGGGPP R P + P
Sbjct: 130 GGRGGGQYQGRGGHYQGRGGQGSHHPGGGPPEYQGRGGPGSHHP 173
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = +2
Query: 689 PPPGXPXXXPPXAXLRXXXXXXXXAPAPPXTXGGWXXAXXXSRPXP 826
PPP P PP + P PP G A RP P
Sbjct: 327 PPPAPPPPPPPPSRFNNTTPKPPPPPPPPEPPTGPVSARRLLRPLP 372
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 94 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESKSTVRILADLQMN 249
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 391 GRGERSPRRWLQPRLAVPRQASTSVPRTP 305
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -3
Query: 336 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 169
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,990,026
Number of Sequences: 37544
Number of extensions: 477735
Number of successful extensions: 1686
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1671
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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