Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_C06
         (847 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical pr...   161   4e-40
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    33   0.19 
Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical pr...    33   0.26 
U58746-5|AAB00625.1|  310|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical ...    29   4.2  
U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein...    29   5.5  
AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical ...    29   5.5  
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass...    28   9.6  
AL032632-7|CAA21586.1|  313|Caenorhabditis elegans Hypothetical ...    28   9.6  

>U23412-5|AAK21467.2|  492|Caenorhabditis elegans Hypothetical
           protein T10F2.4 protein.
          Length = 492

 Score =  161 bits (392), Expect = 4e-40
 Identities = 94/223 (42%), Positives = 122/223 (54%), Gaps = 1/223 (0%)
 Frame = +3

Query: 114 MSLYCAISNXXXXXXXXSPTSGAVFERRIIEKYIIENGVDPINGKELRVEDLXXXXXXXX 293
           MS  C IS         S  SG +F+RR+I K+I ENG DPI+  EL  + L        
Sbjct: 1   MSFVCGISGELTEDPVVSQVSGHIFDRRLIVKFIAENGTDPISHGELSEDQLVSLKSGGT 60

Query: 294 XXXXXX-SATSIPATLKSMQGEWDALMLHAFTQRQQLQTARQELSHALYQHDAACRVIAR 470
                  S TSIP+ LK +Q EWD +ML++F+ RQQLQ ARQELSH+LYQHDAACRVI+R
Sbjct: 61  GSAPRNVSGTSIPSLLKMLQDEWDTVMLNSFSLRQQLQIARQELSHSLYQHDAACRVISR 120

Query: 471 LTKEVTAAREALATLKPQAGIAAPQAPHPTEXXXXXXXXXXXXXDVVSRLQERATXLTQE 650
           L+KE+TAAREAL+TLKP             E              ++++L+E++  LT E
Sbjct: 121 LSKELTAAREALSTLKPHTSAKVDDDVSIDESEDQQGLSEA----ILAKLEEKSKSLTAE 176

Query: 651 RKPRXRTLXXGLVAPXXIXAFLXLASXPGSSFXQXXGILSLEI 779
           RK R + L  GL     +      AS  G       GI +L+I
Sbjct: 177 RKQRGKNLPEGLAKTEELAELKQTASHTGIHSTGTPGITALDI 219


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 30/81 (37%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
 Frame = +2

Query: 446 RSVSCD-SPTHKGGDGG--ARGPRHAETAGRHCSTPSTTPHGGVSRQCGSNRHVCGRGVS 616
           R  SC  SP  + G GG    G R     GRH    S    GG  R  G  RH  G    
Sbjct: 290 RHGSCSGSPRGRHGHGGHGGHGSRSGSPGGRHGHGGSGHHRGG--RHGGHGRH--GSRSG 345

Query: 617 SAGARHRTHAGTEAPXPHPXR 679
           S G RH  H G   P   P R
Sbjct: 346 SPGGRH-GHGGRHGPPHCPGR 365


>Z81034-4|CAB02729.1|  541|Caenorhabditis elegans Hypothetical
           protein C15C6.3 protein.
          Length = 541

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 21/85 (24%), Positives = 36/85 (42%)
 Frame = +2

Query: 416 RIKSCTVPTRRSVSCDSPTHKGGDGGARGPRHAETAGRHCSTPSTTPHGGVSRQCGSNRH 595
           R+K  T+P  R +S DS +  G     R  R      R  +  +++  G  S++    +H
Sbjct: 229 RLKIATIPGARDISTDS-SDAGSSSRRRRARRRSHRSRSRTYSTSSDRGSSSKRSRQQQH 287

Query: 596 VCGRGVSSAGARHRTHAGTEAPXPH 670
           +  +  SS   R R+ +    P  H
Sbjct: 288 MKRKTPSSPSRRSRSRSPPPYPPGH 312


>U58746-5|AAB00625.1|  310|Caenorhabditis elegans Hypothetical
           protein R05G6.4 protein.
          Length = 310

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 174 SGAVFERRIIEKYIIENGVDPINGKELRVEDL 269
           S +V +  ++EK I  +G+DPING+ +  +D+
Sbjct: 251 SKSVVKYDVVEKLIKGDGIDPINGEPMSEDDI 282


>AC025724-8|AAG23381.1|  460|Caenorhabditis elegans Hypothetical
           protein Y67D8C.2 protein.
          Length = 460

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +2

Query: 278 QNTTYSKAKTSKCHINPCHTEKHAR*VGRPDVTCLHTET-AVADC*TRIKSCTVPTRRSV 454
           QN       T++C    C TE   + +  PD+   + +T A+    T I+S T+  +   
Sbjct: 258 QNCDSMSIVTTECSKTDCETEHETQIIDSPDIDYKNEDTDAIEKETTSIESITIQEK--- 314

Query: 455 SCDSPTHK 478
           SCD+   K
Sbjct: 315 SCDNENDK 322


>U97403-2|AAB52472.2|  649|Caenorhabditis elegans Hypothetical
           protein T10E9.4 protein.
          Length = 649

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
 Frame = +2

Query: 458 CDSPTHKGGDGGAR---GPRHAETAGRHCSTPSTTPHGGVSRQCGSNRHVC 601
           CD  T++ G  G R   G    E  G  CS+      G V      N+HVC
Sbjct: 489 CDPDTNRVGILGKRHLTGEERTEVKGSACSSNKDCKSGTVCVYVNINKHVC 539


>U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein 1
           protein.
          Length = 1376

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/68 (29%), Positives = 27/68 (39%)
 Frame = +3

Query: 186 FERRIIEKYIIENGVDPINGKELRVEDLXXXXXXXXXXXXXXSATSIPATLKSMQGEWDA 365
           F   ++   I+ NGVD    +E   +DL                + I     S QG  DA
Sbjct: 474 FTEELVHSQIMSNGVDECKIREREADDL---LVNINDVRHLPDFSRIGNQCLSSQGFADA 530

Query: 366 LMLHAFTQ 389
           LM+H F Q
Sbjct: 531 LMVHEFVQ 538


>AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical
           protein Y62H9A.1 protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -1

Query: 286 GVLISIRSSTLNSLPLIGSTPFSIMYFSMILLSNT 182
           GVL+ I ++T  +L L+  TPF    F+M++L+ T
Sbjct: 264 GVLVGIPAATAMALLLMQYTPFEGFPFAMVVLAPT 298


>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 213 protein.
          Length = 1437

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 314 TWRFWLYYRWCFDLNKVLNSQLLAVNRIHAIFYYVL 207
           +WR+W+Y +W  + ++     ++   +IH    YVL
Sbjct: 500 SWRYWMYSKWNLETSRHPEMHIMK-GKIHGRTKYVL 534


>AL032632-7|CAA21586.1|  313|Caenorhabditis elegans Hypothetical
           protein Y11D7A.11 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 464 SPTHKGGDG--GARGPRHAETAGRHCSTPSTTP 556
           +P   G DG  GA+GP  A+    HC  P T P
Sbjct: 279 APGGPGADGEPGAQGPLGAKGECSHCPPPRTAP 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,417,436
Number of Sequences: 27780
Number of extensions: 353097
Number of successful extensions: 1095
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)