Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_C04
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    29   0.82 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   1.9  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   4.4  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   7.6  

>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 132 LRESHQYYRAVVRMHLVLL 188
           L+ESHQ YR +V +HL LL
Sbjct: 297 LKESHQIYRKMVSLHLELL 315


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
 Frame = +3

Query: 270 SIENGVQAKSDGSHKYLSITQGPLPSYAH-----TPGTTIELTCEAAGSPAPSVHWFKND 434
           S +N    K+D S +    T     +Y++     T  T  + T E   S +       N 
Sbjct: 244 STQNPTANKTDASQQSTESTSSSASAYSYITTLQTATTAQQTTSENTYSTSGPNLTTSNT 303

Query: 435 SPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQDVYTCL 560
           SP     + S+  I  SP+     SST  +T  ++    T +
Sbjct: 304 SPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTII 345


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 360 PGTTIELTCEAAGSPAPSVHWFKNDSP 440
           PG T + TC   GS   +V++ KN  P
Sbjct: 427 PGCTYDNTCSQRGSVIANVYFAKNKQP 453


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/76 (21%), Positives = 32/76 (42%)
 Frame = +3

Query: 312 KYLSITQGPLPSYAHTPGTTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPT 491
           K+L +    +    +TPG T ++      +P PS +           +  ++ +  ++ T
Sbjct: 8   KFLLLVTAVMAQTEYTPGFTTDVATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNIT 67

Query: 492 SIARISSTLIVTRTTS 539
           SI    ST   + TT+
Sbjct: 68  SIVPPPSTSHNSTTTT 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,422
Number of Sequences: 5004
Number of extensions: 57068
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)