Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_C03
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 35 0.089
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 32 0.63
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 1.9
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 30 1.9
06_01_0486 - 3455030-3455770 29 3.4
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 4.4
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 29 4.4
12_02_1174 - 26696869-26698191 28 7.8
11_06_0610 - 25449085-25453284 28 7.8
07_01_0479 + 3606663-3607448 28 7.8
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 7.8
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 7.8
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 7.8
01_01_0715 - 5542648-5543219,5543352-5543544 28 7.8
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 34.7 bits (76), Expect = 0.089
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +2
Query: 584 PPPKTXGLXRXXPXGGXPPTXGX-GXAPPPXLPQXLXXXXPPXXPPXGRA 730
PPP G P G PP G +PPP P PP PP G A
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGA 386
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/48 (33%), Positives = 18/48 (37%)
Frame = +2
Query: 584 PPPKTXGLXRXXPXGGXPPTXGXGXAPPPXLPQXLXXXXPPXXPPXGR 727
PPP P G PP PPP P+ PP PP G+
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPK--GPSPPPPPPPGGK 373
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.9 bits (69), Expect = 0.63
Identities = 21/77 (27%), Positives = 22/77 (28%)
Frame = +2
Query: 584 PPPKTXGLXRXXPXGGXPPTXGXGXAPPPXLPQXLXXXXPPXXPPXGRAXXXXXXAXXXX 763
PPP L + PP PPP LP L PP PP
Sbjct: 568 PPPPPPPLPQSNYASSQPPPP----PPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPP 623
Query: 764 XPXXXXXXAXPPXXPXP 814
P PP P P
Sbjct: 624 PPPLPNHSVLPPPPPPP 640
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 215 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 331
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/57 (33%), Positives = 22/57 (38%)
Frame = +2
Query: 554 VXGXXXXXXXPPPKTXGLXRXXPXGGXPPTXGXGXAPPPXLPQXLXXXXPPXXPPXG 724
+ G P P T G P PP+ G G PPP P + PP PP G
Sbjct: 1077 IQGGIPPLPPPLPPTLGDYGVAPP---PPSIGAGAPPPPPPPGGITGVPPP--PPIG 1128
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +2
Query: 584 PPPKTXGLXRXXPXGGXPPTXGXGXAPPPXLPQXLXXXXPPXXPP 718
PPP GL P G G PPP P PP PP
Sbjct: 1123 PPPPIGGLGGHQAPPAPPLPEGIGGVPPP--PPVGGLGGPPAPPP 1165
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +2
Query: 584 PPPKTXGLXRXXPXGGXPPTXGXGXAPPPXLPQXLXXXXPPXXPPXG 724
PPP GL P PP G PPP + PP PP G
Sbjct: 1150 PPPPVGGLG--GPPAPPPPAGFRGGTPPPNAHGGV---APPPPPPRG 1191
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +2
Query: 584 PPPKTXGLXRXXPXGGXPPTXGXGX---APPPXLPQXLXXXXPPXXPPXG 724
PPP G+ P PP G G P P LP+ + PP PP G
Sbjct: 1111 PPPPPGGITGVPPP---PPIGGLGGHQAPPAPPLPEGIGGVPPP--PPVG 1155
>06_01_0486 - 3455030-3455770
Length = 246
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 620 PXGGXPPTXGXGXAPPPXLPQXLXXXXPPXXPP 718
P PPT +PPP +P + PP PP
Sbjct: 82 PTPRPPPTPPYVPSPPPYVPPYIPPPTPPYVPP 114
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +2
Query: 584 PPPKTXGLXRXXPXGGXPPTXGXGXAPPPXLPQXLXXXXPPXXPPXG 724
PPP PP G APPP P PP PP G
Sbjct: 904 PPPAPSATANTASALSPPPPRPPG-APPPPPPPGKPGGPPPPPPPPG 949
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -3
Query: 317 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVRG 153
H P AAA P VP++ P L + GG GL S S + G + D G+ G
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +2
Query: 584 PPPKTXGLXRXXPXGGXPPTXGXGXAPPPXLPQXLXXXXPPXXPP 718
PPP T P PP PPP LP PP PP
Sbjct: 192 PPPPTR------PPSVKPPVVQPKPQPPPTLPPPSPPPPPPTVPP 230
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 620 PXGGXPPTXGXGXAPPPXLPQXLXXXXPPXXPPXGRA 730
P G PPT +PPP +P+ P PP G +
Sbjct: 551 PEGKSPPTPTASHSPPP-VPEGHTPSPPKSGPPAGES 586
>07_01_0479 + 3606663-3607448
Length = 261
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +2
Query: 584 PPPKTXGLXRXXPXGGXPPTXGXGXAPPPXLP 679
PPP R GG PP G PPP P
Sbjct: 212 PPPMGPPQVRPGMPGGPPPGMRPGMPPPPFRP 243
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +2
Query: 584 PPPKTXGLXRXXPXGGXPPTXGXGXAPPPXLPQXLXXXXPPXXPPXG 724
PPP P P G G PPP P P P G
Sbjct: 323 PPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPG 369
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 399 GRGERSPRRWLQPRLAVPRQASTSVPRTP 313
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -3
Query: 344 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 177
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
>01_01_0715 - 5542648-5543219,5543352-5543544
Length = 254
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Frame = +2
Query: 584 PPPKTXGLXRXXPXGGXPP---TXGXGXAPPPXLPQXLXXXXPPXXPP 718
PPP T PP T G AP P +P PP PP
Sbjct: 146 PPPPTVPAAPTPRPSPPPPAAGTNGTARAPSPPVPAPAPAGSPPPPPP 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,842,345
Number of Sequences: 37544
Number of extensions: 527142
Number of successful extensions: 1872
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1766
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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