Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_C03
(820 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 47 2e-07
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 47 2e-07
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 47 2e-07
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 44 2e-06
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 44 2e-06
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 44 2e-06
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 43 3e-06
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 43 3e-06
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 43 3e-06
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 43 4e-06
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 41 1e-05
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 41 1e-05
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 38 1e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 35 0.001
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 34 0.002
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 33 0.002
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 33 0.002
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 33 0.002
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 7.8
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 7.8
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 7.8
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 7.8
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 7.8
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 47.2 bits (107), Expect = 2e-07
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 204 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 377
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 378 GDYALRARVSNNGSVSWI 431
G Y V++NGS ++
Sbjct: 153 GTYQTNVVVTHNGSCLYV 170
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 47.2 bits (107), Expect = 2e-07
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 204 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 377
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 378 GDYALRARVSNNGSVSWI 431
G Y V++NGS ++
Sbjct: 153 GTYQTNVVVTHNGSCLYV 170
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 46.8 bits (106), Expect = 2e-07
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 204 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 377
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 378 GDYALRARVSNNGSVSWI 431
G Y V++NGS ++
Sbjct: 85 GTYQTSVVVTHNGSCLYV 102
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 204 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 377
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 378 GDYALRARVSNNGSVSWI 431
G Y V+++GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 204 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 377
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 378 GDYALRARVSNNGSVSWI 431
G Y V+++GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 204 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 377
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 378 GDYALRARVSNNGSVSWI 431
G Y V+++GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 204 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 377
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 378 GDYALRARVSNNGSVSWI 431
G Y V+++GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +3
Query: 204 NIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 377
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 378 GDYALRARVSNNGSVSWI 431
G Y V+++GS ++
Sbjct: 85 GTYQTSVVVTHDGSCLYV 102
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 44.0 bits (99), Expect = 2e-06
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Frame = +3
Query: 165 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 338
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 339 PDVVLL-NAAATTAGDYALRARVSNNGSVSW 428
PD+VL NA A +A + + G V W
Sbjct: 113 PDIVLYNNADGNFEVTLATKATIYHQGLVEW 143
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 44.0 bits (99), Expect = 2e-06
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 246 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGS 419
++ +W D +L W+ E+G L V S+ +WRPD+VL NA A +A ++ G
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGR 136
Query: 420 VSW 428
V W
Sbjct: 137 VEW 139
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 43.6 bits (98), Expect = 2e-06
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +3
Query: 168 IVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 344
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 345 VVLLNAAATTAGDYALRAR--VSNNGSVSWI 431
+L N A + VS+ G V W+
Sbjct: 92 TILYNNADPQYSSAVINTNVIVSHTGEVVWL 122
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 43.2 bits (97), Expect = 3e-06
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Frame = +3
Query: 165 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWR 338
K+ VN L ++ N+ E ++ L+ W D +L W+ ++G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 339 PDVVLLNAAATTAGDYALRAR----VSNNGSVSWI 431
PD+VL N A G+Y +R + + NG V W+
Sbjct: 111 PDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWV 142
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 43.2 bits (97), Expect = 3e-06
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 246 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 419
L++ W D + WN ++G L + RLW+PDV++ N+A G Y V NNG+
Sbjct: 76 LKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
Query: 420 VSWI 431
++
Sbjct: 136 CLYV 139
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 43.2 bits (97), Expect = 3e-06
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Frame = +3
Query: 246 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTAGDYAL----RARVSN 410
++ W D +L WN E+G L V SE +W PD+VL N A G+Y + +A +
Sbjct: 86 VEQRWNDYKLKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKY 142
Query: 411 NGSVSW 428
G VSW
Sbjct: 143 TGDVSW 148
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 42.7 bits (96), Expect = 4e-06
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Frame = +3
Query: 168 IVVNLTLHLRHA---NIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLW 335
+VV L L L N+++ T + L+ W D + W+ E+G T L V SE +W
Sbjct: 46 VVVKLGLRLSQLIDLNLKDQILTTNVW--LEHEWQDHKFQWDPAEYGGVTELYVPSEHIW 103
Query: 336 RPDVVLLNAAATTAGDYAL-RARVSNNGSVSW 428
PD+VL N A G + +A + G V W
Sbjct: 104 LPDIVLYNNADGEYGVTTMTKAILHYTGKVLW 135
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.1 bits (92), Expect = 1e-05
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Frame = +3
Query: 165 KIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWR 338
++ + L L L N++ T + ++ +W D +L W E+G L V S+ +WR
Sbjct: 55 RVCIKLKLSQLIDVNLKNQIMTTNLW--VEQSWYDYKLRWEPKEYGGVKMLHVPSDHIWR 112
Query: 339 PDVVLLNAAATTAGDYAL----RARVSNNGSVSW 428
PD+VL N A G+Y + +A V +G V W
Sbjct: 113 PDIVLYNNA---DGNYEVTLMTKATVYYSGLVVW 143
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 41.1 bits (92), Expect = 1e-05
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Frame = +3
Query: 135 RTIGSLPPYSKIVVNLTL-HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWG-CST 308
R +G+ + + L L L N++ T + ++ W D +L WN ++G T
Sbjct: 37 RPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVW--VEQEWNDYKLKWNPDDYGGVDT 94
Query: 309 WLVSSERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSVSW 428
V SE +W PD+VL N A G+Y + +A + + G V W
Sbjct: 95 LHVPSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVW 135
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 37.5 bits (83), Expect = 1e-04
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 174 VNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVV 350
++ L ++H N+ E TV L++ W L+W + E+ ++ V S +W PD+V
Sbjct: 62 IDFGLSIQHYNVDEYSHTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV 121
Query: 351 L 353
+
Sbjct: 122 M 122
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 34.7 bits (76), Expect = 0.001
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Frame = +3
Query: 207 IRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAAT---TA 377
I E + T + + +W+D+RL++ G+ + + R+W+PD N + T
Sbjct: 44 ISEVDMTYSMDCYFRQSWVDRRLAFQGGKETLALSISMLARIWKPDTYFYNGKHSYLHTI 103
Query: 378 GDYALRARVSNNGSVSWIKRLDISTPISMQLD 473
R+ +G V + RL I M L+
Sbjct: 104 TSPNKFVRLYQDGRVLYSSRLTIKAGCPMNLE 135
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 33.9 bits (74), Expect = 0.002
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = +3
Query: 249 QMNWIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYAL---RARVSNNGS 419
+ +W D RLS+ S + ER+WRPD N + + R+S +G
Sbjct: 90 RQSWRDSRLSFLGPIKSLSLSIKMLERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGD 149
Query: 420 VSWIKRLDISTPISMQL 470
+ + RL I M+L
Sbjct: 150 ILYSMRLTIKAKCPMEL 166
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 33.5 bits (73), Expect = 0.002
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Frame = +3
Query: 258 WIDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSN 410
W D RL++ G T V SE +W PD +N ATT+ ++ R+ +
Sbjct: 67 WTDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHH 122
Query: 411 NGSVSWIKRLDISTPISMQLDXWAQRHAXLHVQVXVLG 524
+GS++ RL I+ M L + H+++ G
Sbjct: 123 SGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFG 160
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 33.5 bits (73), Expect = 0.002
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Frame = +3
Query: 258 WIDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSN 410
W D RL++ G T V SE +W PD +N ATT+ ++ R+ +
Sbjct: 67 WTDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHH 122
Query: 411 NGSVSWIKRLDISTPISMQLDXWAQRHAXLHVQVXVLG 524
+GS++ RL I+ M L + H+++ G
Sbjct: 123 SGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFG 160
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 33.5 bits (73), Expect = 0.002
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Frame = +3
Query: 258 WIDKRLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSN 410
W D RL++ G T V SE +W PD +N ATT+ ++ R+ +
Sbjct: 6 WTDPRLAFKK-RTGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RIHH 61
Query: 411 NGSVSWIKRLDISTPISMQLDXWAQRHAXLHVQVXVLG 524
+GS++ RL I+ M L + H+++ G
Sbjct: 62 SGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFG 99
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 472 TIGPNDMXTCT 504
T GPN++ TCT
Sbjct: 418 TTGPNEIVTCT 428
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 472 TIGPNDMXTCT 504
T GPN++ TCT
Sbjct: 404 TTGPNEIVTCT 414
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 472 TIGPNDMXTCT 504
T GPN++ TCT
Sbjct: 438 TTGPNEIVTCT 448
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.8 bits (44), Expect = 7.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 472 TIGPNDMXTCT 504
T GPN++ TCT
Sbjct: 387 TTGPNEIVTCT 397
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 7.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 311 PSAAAPFPCVPTQS 270
PSA AP P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,429
Number of Sequences: 438
Number of extensions: 4952
Number of successful extensions: 65
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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