Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_C02
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 77 2e-14
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 74 2e-13
06_01_0561 - 3983308-3983564,3983652-3983775 30 2.5
02_01_0062 - 448105-448145,448780-448866,449664-449790 29 4.3
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 24 5.1
12_02_0478 + 19514509-19514940,19515749-19515820,19515954-195159... 29 5.7
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 5.7
12_01_0252 + 1868670-1869200,1870167-1871120 28 7.6
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 7.6
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 25 7.9
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 25 8.1
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 28 10.0
05_03_0665 - 16774043-16774522 28 10.0
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 77.0 bits (181), Expect = 2e-14
Identities = 35/64 (54%), Positives = 45/64 (70%)
Frame = +2
Query: 53 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 232
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 233 KLVL 244
KL L
Sbjct: 61 KLQL 64
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 73.7 bits (173), Expect = 2e-13
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +2
Query: 86 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 244
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL L
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQL 64
>06_01_0561 - 3983308-3983564,3983652-3983775
Length = 126
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 700 PPPPPPPXXXGXXXXXXRGGG 762
PPPPPPP G GGG
Sbjct: 32 PPPPPPPPPSGAAAGEDNGGG 52
>02_01_0062 - 448105-448145,448780-448866,449664-449790
Length = 84
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 698 PPPPPPXXXXXXXXXXXPGGGG 763
PPPPPP PGGGG
Sbjct: 18 PPPPPPPFFPPQWAPPVPGGGG 39
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 700 PPPPPPPXXXGXXXXXXRGGGG 765
PPPPPPP GGGG
Sbjct: 18 PPPPPPPFFPPQWAPPVPGGGG 39
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 23.8 bits (49), Expect(2) = 5.1
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 700 PPPPPPP 720
PPPPPPP
Sbjct: 52 PPPPPPP 58
Score = 23.4 bits (48), Expect(2) = 5.1
Identities = 9/21 (42%), Positives = 9/21 (42%)
Frame = +1
Query: 703 PPPPPPXXXGXXXXXXRGGGG 765
PPPPPP G G G
Sbjct: 64 PPPPPPARSGGGGGSDDGSDG 84
>12_02_0478 +
19514509-19514940,19515749-19515820,19515954-19515986,
19516169-19516830,19516905-19517045,19518634-19518830,
19518878-19518965,19518987-19519041,19519501-19519571,
19519709-19519763,19519881-19519896,19520286-19520361,
19521202-19521240,19521312-19521333
Length = 652
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 700 PPPPPPPXXXGXXXXXXRGGG 762
PPPPPPP RGGG
Sbjct: 81 PPPPPPPPQQQQQREAARGGG 101
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 153 TFSAPRWVVAASILVTSSSLRASTSNP 73
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>12_01_0252 + 1868670-1869200,1870167-1871120
Length = 494
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 764 PPPPRXXXXXXPXXXGGGGGGG 699
PPPP P GGGGG G
Sbjct: 63 PPPPPPPPLNWPTAGGGGGGSG 84
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 764 PPPPRXXXXXXPXXXGGGGGGG 699
PPPP P GGGGGG
Sbjct: 8 PPPPPPPPQHPPPPQAGGGGGG 29
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 700 PPPPPPPXXXGXXXXXXRGGGG 765
PPPPPPP GGGG
Sbjct: 8 PPPPPPPPQHPPPPQAGGGGGG 29
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 25.0 bits (52), Expect(2) = 7.9
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 700 PPPPPPPXXXG 732
PPPPPPP G
Sbjct: 929 PPPPPPPGKPG 939
Score = 21.4 bits (43), Expect(2) = 7.9
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +1
Query: 706 PPPPPXXXGXXXXXXRGG 759
PPPPP G GG
Sbjct: 941 PPPPPPPPGSLPRNLAGG 958
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 25.0 bits (52), Expect(2) = 8.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 700 PPPPPPPXXXG 732
PPPPPPP G
Sbjct: 624 PPPPPPPGKPG 634
Score = 21.4 bits (43), Expect(2) = 8.1
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +1
Query: 706 PPPPPXXXGXXXXXXRGG 759
PPPPP G GG
Sbjct: 636 PPPPPPRPGSLPRNLAGG 653
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +2
Query: 8 FFASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETY 175
+F ++ HY + VT +AT G + ++ L +ED+ K L+A H E + MET+
Sbjct: 246 WFRNKGHYIKSQVT--AAT--GAIALMQL-QEDLKKHLSAECHYTEEELEAYMETH 296
>05_03_0665 - 16774043-16774522
Length = 159
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 763 PPPPGXXXXXXXXXXXGGGGGG 698
PPPPG GGGGGG
Sbjct: 84 PPPPGRRDGYLGGGGAGGGGGG 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,764,154
Number of Sequences: 37544
Number of extensions: 605672
Number of successful extensions: 13686
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9755
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -