Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_B20
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   223   2e-59
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    54   3e-08
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    30   0.33 
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    29   0.76 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.3  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    28   1.8  
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    27   2.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   2.3  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    27   4.0  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    26   5.4  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.4  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   5.4  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   9.4  
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    25   9.4  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    25   9.4  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   9.4  
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc...    25   9.4  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  223 bits (546), Expect = 2e-59
 Identities = 103/178 (57%), Positives = 137/178 (76%)
 Frame = +3

Query: 153 WDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLP 332
           +++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R+A++  +++ P LE+LLP
Sbjct: 19  FEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELERLLP 78

Query: 333 HIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQA 512
            ++GNVGFVFT  DL EVR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQA
Sbjct: 79  VVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQA 138

Query: 513 LSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 686
           L IPTKI++GTIEI +DVH++    KVG SEATLLNMLNISPF+YG+ V  +YD G +
Sbjct: 139 LGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNV 196


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 21/190 (11%)
 Frame = +3

Query: 150 SWDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI-----KDHLDNNPA 314
           S D +   +I    N+ +  +++IR   +GS I  MGK  +M KA+     ++H +N   
Sbjct: 33  SLDSFDYMWIFDVTNMRNTYLKRIRDDWKGSRI-FMGKTKVMAKALGHTPEEEHAENVSK 91

Query: 315 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIPA----HNTG 479
           L KLL    G VG +FT     EV     E+ VQ   AR GA+AP + VIPA       G
Sbjct: 92  LTKLL---HGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIPAGPVYSRAG 147

Query: 480 LGPEKTSFF---------QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 632
             P +             + L +PT +  G + ++ D  +   G ++ + +  LL +  I
Sbjct: 148 QIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQTRLLKLFGI 207

Query: 633 --SPFSYGLV 656
             + F  GL+
Sbjct: 208 TAAEFKVGLL 217


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +1

Query: 1   YWIFEFCPARKSCVLSCP*ISSKSLRHT 84
           YW+F   P    C+LSC  ISS S  HT
Sbjct: 377 YWLFGISPIPYICILSC--ISSNSAGHT 402


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 250 CSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLAS 357
           CS EKT  C++  K+  T+ +PS  CC   ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 556 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 431
           +IS  P + L+GI  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = -3

Query: 292 SLMALRIIVFFPMSTILEPRSEXXXXXXXCEPTLSAPTMKHFGYSSQELDDLNEVVRLPS 113
           S+ A+ I   FP    L+P  +         P+L   +M H  ++        + + L S
Sbjct: 103 SVFAMAICTTFPHVHALKPLLDTAWEIFDSSPSLKTLSMLHKSFNLHNFQSFYQKLSLDS 162

Query: 112 SLVL 101
           SL+L
Sbjct: 163 SLIL 166


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 316 RAGLLSRWSLMALRIIVFFPMSTILEPR 233
           +A     W LM + +++F  +  ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 29/107 (27%), Positives = 47/107 (43%)
 Frame = +1

Query: 157 TSTQNVSSWVPITWARNRCSRSVSRYVAPVSCSWEKTL*CAKPSKTTWTTIQPSRNCCHT 336
           TST   S+  P+T      S SV     PV+ S   T+  + P  +T  T   + NC  T
Sbjct: 482 TSTPVTST--PLTTTNCTTSTSVPYTSTPVTSS-NYTISSSTPVTSTPVT---TTNCT-T 534

Query: 337 SRATLASCSPAETSWRSVTNCWRTKSKLQLVPVPLPHCQSSFPPTTP 477
           S + L + +P  ++  + TNC  T + +     P+     +   +TP
Sbjct: 535 STSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTISSSTP 580


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -3

Query: 394 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 269
           L +T  +S    + PTLP +   + S +G+LSR + + ++ I
Sbjct: 35  LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 563 IVDDFNSTL*NLGRDRKSLEERGLLWTKAGVVGGNDD*QWG 441
           IVD  NS   +  R  + L ++G+L+  +GV GG +  ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -3

Query: 490 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 320
           +G  PV    +  + G++ P  AGAW L  N L    T   +   +NT P  PL  G  F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194

Query: 319 SRAGL 305
           S   L
Sbjct: 195 SEEEL 199


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -3

Query: 190 SAPTMKHFGYSSQELDDLNEVVRLPSSLVLPTHPG*CGVGTSMKFKDKTKRTTSVRDKIQ 11
           SA T  + G +++       V   PS+L  PT        T+   K K  ++T+VRD + 
Sbjct: 537 SATTPAYVGGATKTPSTTKAVESTPSTL--PTSASTNAAATTTTKKPKAAKSTAVRDDVS 594

Query: 10  KSS 2
            +S
Sbjct: 595 SAS 597


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 409  LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 248
            LFSN + R +    R+ T     L+ GN++     +  W+L+A   I  F  +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +2

Query: 443 PIVSRHSRPQHRPWSREDLFLPGSFYPYQDFKGYY*NHQRCTHLE 577
           P+    ++P H+PW  E+    G F       G   +H+   H E
Sbjct: 183 PVPHNGTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEE 227



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +2

Query: 443 PIVSRHSRPQHRPWSREDLFLPGSFYPYQDFKGYY*NHQRCTHLE 577
           PI    ++P H+PW  E+    G F       G   +H+   H E
Sbjct: 295 PIPHNGTKPDHKPWKHEEHCHHGRFPRPVPHNGTKPDHKPWKHEE 339


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 168 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 314
           K  IVGA NVGS     + +S   + IV++  N   +KA  + +D N A
Sbjct: 22  KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 13  EFCPARKSCVLSCP*ISSKSLRH 81
           E  PA++   LSCP + SK + H
Sbjct: 489 EIVPAKERAYLSCPKVWSKIINH 511


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 17  FVPHGSRAFCLVLKFHRSPYA 79
           F+PHG+R +  +LK+ R  Y+
Sbjct: 313 FLPHGARIYNTLLKYMRYQYS 333


>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 563 IVDDFNSTL*NLGRDRKSL 507
           +VD  NSTL N+GR R S+
Sbjct: 98  VVDSVNSTLNNIGRGRLSV 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,355,874
Number of Sequences: 5004
Number of extensions: 72194
Number of successful extensions: 204
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)