Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_B19
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0201 + 5728377-5728584,5729044-5729153,5729231-5729286,572... 33 0.33
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 32 0.57
01_01_1137 + 9017211-9018584 30 1.7
04_04_0452 + 25342306-25342552,25342658-25342785,25342868-253431... 29 4.0
02_05_0943 + 32976990-32976996,32977119-32977464,32977586-329777... 29 4.0
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 29 4.0
08_02_0707 - 20212190-20214592 29 5.3
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829... 29 5.3
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462... 28 7.1
03_04_0023 + 16537257-16537272,16537515-16537929,16538404-165384... 28 9.3
01_02_0098 - 11087875-11089110,11091744-11092022 28 9.3
>09_02_0201 +
5728377-5728584,5729044-5729153,5729231-5729286,
5729396-5729480,5729550-5729597,5729723-5729797,
5729893-5730004,5730371-5730536,5730579-5730630,
5730729-5730786,5731029-5731127,5731219-5731349
Length = 399
Score = 32.7 bits (71), Expect = 0.33
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -3
Query: 187 LQHGLPILEPPRSGCTCARARRLVGDFNFCSLRAIRRYKSYYVD*GSLEYDSS 29
LQH LPI+ P RS +C+ +R + F + I R Y +D S D+S
Sbjct: 222 LQHFLPIMNPVRSESSCSSSRVIAISACFTGMSLICRGCYYILDLHSFRKDNS 274
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 31.9 bits (69), Expect = 0.57
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 423 TEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGR 545
+ E EH SS +H HR + H + EHR RH+R R
Sbjct: 778 SSEDEHEHRSSKSRHR-HRDDYHYHEDDEHRSSHRHQRDHR 817
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +3
Query: 363 SHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRR 518
S NY+ S +R H E +R H S HKH L R + EP H R
Sbjct: 725 SDEENYDSEESYKHSR-KKHRSEDSRAHTSDVHKHKLKRHS--KDLEPRHHR 773
>01_01_1137 + 9017211-9018584
Length = 457
Score = 30.3 bits (65), Expect = 1.7
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Frame = -3
Query: 346 VRSLHGGKMSCESAQVAGGETSAVAAHPVREN-RADRLDGTEA--GRRVRQTTRPRLQHG 176
++ L G + + +VAGG V AHP+ E+ R R+ G A G TR G
Sbjct: 264 IKRLQSGIRARAAGKVAGGRVVRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTR---CSG 320
Query: 175 LPILEPPRSGCTCARAR----RLVGDFNFCSLRA--IRRY 74
I RSG C RA RL G +RA +RR+
Sbjct: 321 EGIYFAARSGRLCGRAMADEWRLTGAVTEAGIRAGYLRRW 360
>04_04_0452 +
25342306-25342552,25342658-25342785,25342868-25343110,
25344530-25344782,25344916-25345151
Length = 368
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 434 GFLSVRVTSCKRGGTRKIVVCVVAGKICCGKK-FAWW 327
GF++ +V C +G I +C A +C + +A+W
Sbjct: 291 GFVTAKVACCGQGPYNGIGLCTPASNVCANRDVYAYW 327
>02_05_0943 +
32976990-32976996,32977119-32977464,32977586-32977796,
32977997-32978072,32978175-32978277,32978601-32978669,
32978785-32978821,32978904-32978978,32979052-32979103,
32979188-32979232,32979342-32979442
Length = 373
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -3
Query: 280 AVAAHPVRENRADRL--DGTEAGRRVRQTTRPRLQHGLPILEPPRSGCTCARARRLV 116
A A P EN + ++ D GR +T P QH L E SGCTC R++
Sbjct: 108 AAATVPPFENISPKMLADSMTLGRDNGRTREPVDQHSL---EENHSGCTCVAVPRII 161
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 288 SPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHL 449
S PAT + + P +LLT+ TSH + N T S SH + + RE L
Sbjct: 685 SSPATASAAAASKKP-RLLTSQTTTSHTSTSNATTPRSFDTTSSHQDASFRESL 737
>08_02_0707 - 20212190-20214592
Length = 800
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 363 SHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARH 530
SHH +++ S + S TE + +E+ S H H H + H +E H++ H
Sbjct: 549 SHHHDHHHDSSNEESHHNSLTENSCKENHSHCHGHDHHHHHHHDHSE-HHQQSGDH 603
>01_06_0140 -
26881282-26881290,26882027-26882128,26882816-26882924,
26883712-26883860,26883941-26884043,26884635-26884810,
26885004-26885066,26885258-26885346,26885428-26885538,
26885610-26885744,26886415-26886580,26886788-26886856,
26886943-26887230,26888612-26888866
Length = 607
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -3
Query: 550 IRRPVRSCLAMRRCSGSAGGCRFFR*SACLCVLDKCSRL 434
+R R A R C GSAG R R SA V+ + RL
Sbjct: 31 LRPAARLSFAPRWCGGSAGAARARRESAVTSVISRAPRL 69
>05_04_0389 -
20845490-20845600,20845697-20846006,20846097-20846242,
20846319-20846426,20846508-20846615,20846997-20847109,
20847340-20847437,20847530-20847714,20847811-20847953,
20848293-20848377,20848486-20848624,20848686-20848780,
20848894-20849037,20849114-20849206,20849310-20849376,
20849529-20849641,20849750-20849845,20853885-20854058
Length = 775
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +2
Query: 224 LRTVEAICPVLADWVGRDRGSLTSGYLCRLTRHFTTMQTSYRNKSYQPPRKLQFYGF 394
LR E I +A ++ R +GS S Y+ +F SY SY L Y F
Sbjct: 281 LRAPEDIAFAVALFIARKKGSFVSYYMYHGGTNFGRFAASYVTTSYYDGAPLDEYDF 337
>03_04_0023 +
16537257-16537272,16537515-16537929,16538404-16538466,
16538604-16538607
Length = 165
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 393 STSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHE 533
+TSL R H + + H HA H + PP H ++ RHE
Sbjct: 5 ATSLNRSIDHKQGGQQRGTPQQHLHAGHAQE-QPPGH-GHGQVQRHE 49
>01_02_0098 - 11087875-11089110,11091744-11092022
Length = 504
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 288 RLPRSR-PTQSARTGQIASTVRRPADGS 208
RLP+S+ P + AR Q AS RRP DG+
Sbjct: 12 RLPQSQAPRRQARGLQYASPERRPLDGA 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,134,927
Number of Sequences: 37544
Number of extensions: 355651
Number of successful extensions: 1266
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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