Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_B19
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical pr...    24   2.7  
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    29   4.8  
Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical
           protein F41G3.10 protein.
          Length = 198

 Score = 24.2 bits (50), Expect(2) = 2.7
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +1

Query: 436 TANTCQARTSTHFTGKTCIRQRNPNTAASPDT 531
           T   C    +T  T  TC+   NP T  S  T
Sbjct: 83  TCGYCTGTATTTRTSTTCVDLTNPTTGVSDCT 114



 Score = 23.8 bits (49), Expect(2) = 2.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 286 SHLRLPVQTHKTFYHHANFLPQQILPATTQTTI 384
           S L + V   +TF      L QQ+L  TT+T++
Sbjct: 10  SLLEVVVALMETFSQSPQHLQQQLLSTTTRTSV 42


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/58 (27%), Positives = 21/58 (36%)
 Frame = +1

Query: 358 LPATTQTTILRVPPLLHDVTLTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDT 531
           LP TT+ T+    P   + +   +KPT       T    T K       P T   P T
Sbjct: 591 LPFTTEQTVTTEEPTTAEKSTATQKPTTTQESVSTEKTSTTKKASTTEEPTTTDEPTT 648


>Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical
           protein R166.1 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 279 AEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTR 410
           A + P  T   S  + PP    TA   + +    NF+G+ S+TR
Sbjct: 205 AGILPATTTNVSAAVPPPSSRATANVFSGNSIGLNFSGAASVTR 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,600,146
Number of Sequences: 27780
Number of extensions: 275999
Number of successful extensions: 951
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)