Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_B18
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    32   0.67 
02_01_0054 - 404464-405152,406087-406618                               32   0.67 
11_03_0037 + 9136864-9136993,9137147-9137214,9138891-9139145           30   2.0  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    29   3.6  
02_01_0705 - 5259949-5263887,5266207-5266509                           28   8.2  

>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -1

Query: 343 HQPSAAPPLPCVPSQSFVDPIHLKICLYSHGGLGLTXVSMSQM-QGQVDYDFGXGG 179
           H P AA   P VPS+    P  L +   S GG GL   S S +  G  + D G GG
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>02_01_0054 - 404464-405152,406087-406618
          Length = 406

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
 Frame = -1

Query: 355 AFRGHQPSAAPPLPCVPSQSFVDPIHL-------KICLYSHGGLGLTXVSMSQMQGQVDY 197
           A  G   + AP    V S  +VDP  L       K  +YS G L L  ++ S   G    
Sbjct: 258 ACEGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGP 317

Query: 196 DFGXGGGVPIVRCEERVDHEG 134
           D G GGG    R   RV  EG
Sbjct: 318 DGGAGGGNLTARLLPRVRTEG 338


>11_03_0037 + 9136864-9136993,9137147-9137214,9138891-9139145
          Length = 150

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 297 D*LGTQGSGGAALGWCPRNACGG 365
           D LG Q SGG ++ WC R A  G
Sbjct: 7   DDLGRQTSGGRSMAWCSRRAVAG 29


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 425 GRGERSPRRWXQPGLAVPRQASTSVPRTP 339
           GRG RS  R  +PGLA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>02_01_0705 - 5259949-5263887,5266207-5266509
          Length = 1413

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 285  GSTND*LGTQGSGGAALGWCPR-NACGG 365
            GS  D L  +G GGAALGW  R   CGG
Sbjct: 1189 GSLEDRL--RGGGGAALGWPERLTICGG 1214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,996,725
Number of Sequences: 37544
Number of extensions: 352675
Number of successful extensions: 1190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)