Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_B15
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    29   0.77 
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    27   2.3  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   5.4  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   7.2  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    26   7.2  

>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 527 VTLPPFEEALYNVSLVFVNSH 589
           + LPP+EEAL  VS  F+N H
Sbjct: 197 IQLPPYEEALSIVSQFFMNDH 217


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 370 ADVQQCPNPHGLLGQAHKYHHLQRHG 447
           AD Q+CP P  LL +A   HH+   G
Sbjct: 203 ADSQECPTPQSLLMRAS--HHMSERG 226


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 303 GQHPGHLKYCPIARLSIVEERLSDDRVIFPADDRLLQRWYREGQP 169
           G H GH  Y  I R       L DD  + P ++  LQR++ + QP
Sbjct: 370 GPHRGH--YVSIVRTKTYGWVLFDDENVTPVNENYLQRFFGD-QP 411


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
 Frame = +2

Query: 164 SRGCPSRYQ----RCSRRSS 211
           SR CPS+YQ    RC+R SS
Sbjct: 410 SRSCPSKYQCYSCRCARNSS 429


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 640 PDLDDVRGQAHGRSEHRVGVHKHQRHVV 557
           P L D+RG    + EH + +H  Q+ VV
Sbjct: 393 PPLCDIRGSYTAQFEHTIILHPTQKEVV 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,374,764
Number of Sequences: 5004
Number of extensions: 71236
Number of successful extensions: 196
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)