Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_B15
(802 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0035 - 220036-221419,222050-222801 33 0.20
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 31 1.4
04_03_0636 + 18223229-18223489,18223975-18224519,18225018-182251... 30 1.9
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171... 30 1.9
12_01_0790 + 7216452-7216489,7216664-7216722,7217268-7218750,721... 29 5.7
02_05_0400 + 28671562-28672219,28672365-28672441,28673679-286737... 29 5.7
04_03_0849 + 20265511-20265984,20266452-20266617,20266694-202669... 28 7.5
02_03_0245 + 16802005-16802814,16802849-16803310,16804233-16804448 28 7.5
02_03_0016 + 13962086-13962326,13962529-13962614,13962652-139627... 28 9.9
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 33.5 bits (73), Expect = 0.20
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 358 HHHTADVQQCPNPHGLLGQAHKYHHLQRH-GDISKAKPPQDSGA 486
HHH QQ P P Q H +HH H G +A P+ SGA
Sbjct: 115 HHHQKHQQQPPPPARWAPQHHHHHHPHHHLGLDVEAAVPESSGA 158
>02_05_0672 +
30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 64 QCV*QNNTTQMIDMHQVRNDIPGIVKIKTFATNITRLSLSIPALQQAVISGK 219
+C + + +V DIP ++ ATN+ SL+IP ++ V +GK
Sbjct: 645 KCTEPRSVSHASQQLRVFQDIPDGERLVVVATNVAETSLTIPGIKYVVDTGK 696
>04_03_0636 +
18223229-18223489,18223975-18224519,18225018-18225104,
18225187-18225243,18225391-18225629,18225809-18225942,
18226175-18226261,18226382-18226438
Length = 488
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 646 VAPDLDDVRGQAHGRSEHR-VGVHKHQRHVVQG 551
+A LD + GQA G +HR VGV+K + VV G
Sbjct: 90 MASSLDTLCGQAFGAKQHRLVGVYKQRAMVVLG 122
>02_05_1059 +
33815979-33816235,33816467-33816732,33817149-33817192,
33817363-33817539,33817638-33817964,33818067-33818192,
33818518-33818622,33818815-33820125,33820221-33820382,
33820416-33820517,33820549-33821272,33821358-33821451,
33821824-33821986
Length = 1285
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 670 GGCFWVDVVAPDLDDVRGQAHGRSEHRV-GVHK 575
GG FWV++++PD D A RSE V G+ K
Sbjct: 29 GGRFWVEILSPDADKAAVVAAARSEGLVRGLEK 61
>12_01_0790 +
7216452-7216489,7216664-7216722,7217268-7218750,
7218828-7218892,7219023-7219080,7219152-7219262,
7219332-7219410,7219521-7219613,7219701-7219886
Length = 723
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 595 VHSAHEPVPEHRRDRGLPHQPRNTPLAEGPTATPGLVAAGRG 720
V +H PV RD + PR P P LVA+ RG
Sbjct: 259 VSPSHPPVVARPRDSPIASPPRPEPPVASPLGPKPLVASSRG 300
>02_05_0400 +
28671562-28672219,28672365-28672441,28673679-28673730,
28673851-28674008
Length = 314
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 346 GAVGHHHTADVQQCPNPHGLLGQAHKYHHLQRH 444
GA G + A V N HG G H +HH Q H
Sbjct: 67 GAGGFYQQAAVAPAANGHG-HGHGHHHHHHQHH 98
>04_03_0849 +
20265511-20265984,20266452-20266617,20266694-20266905,
20267154-20267647,20267732-20267780,20267922-20268251
Length = 574
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = +3
Query: 708 RRAWCTSA--WARCSNRPXCPNEL 773
R AWC ++ W R RP CP+ L
Sbjct: 12 RLAWCPASRRWGRRKGRPPCPSSL 35
>02_03_0245 + 16802005-16802814,16802849-16803310,16804233-16804448
Length = 495
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 592 GVHSAHEPVPEHRRDRGLPHQPRNTPLAEGPTATP 696
GV P PE R PH + PLA+G +TP
Sbjct: 431 GVDQGKRPAPEKPRQHW-PHVDQLAPLADGSRSTP 464
>02_03_0016 +
13962086-13962326,13962529-13962614,13962652-13962750,
13963022-13963131,13964024-13964083,13964220-13964304
Length = 226
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 231 DRVIFPADDRLLQRWYREGQPRDIGSEGLD 142
+ V+ ADD + RWY +GQ D EG D
Sbjct: 97 ESVVVFADDAAVVRWYSDGQAVDPRYEGDD 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,895,599
Number of Sequences: 37544
Number of extensions: 605661
Number of successful extensions: 1942
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1939
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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