Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_B15
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.8  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 147 LDLHNTRNIVSYLVHVYHLCCIILL 73
           +DL   R    YL+ +Y  CC++++
Sbjct: 233 VDLLFKREFSYYLIQIYIPCCMLVI 257


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 147 LDLHNTRNIVSYLVHVYHLCCIILL 73
           +DL   R    YL+ +Y  CC++++
Sbjct: 233 VDLLFKREFSYYLIQIYIPCCMLVI 257


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
 Frame = -2

Query: 288 HLKYCPIARLSIVEERLSDDRVI-FPADDRLLQRWYREGQPRDIGSEGL------DLHNT 130
           H K C +     ++ER   +    F + D  L+   R G+P ++  + +      D H+T
Sbjct: 26  HKKLCAVYGDEALKERQCQNWFDKFRSGDFSLKDEKRSGRPVEVDDDLIKAIIDSDRHST 85

Query: 129 RNIVSYLVHVYHLC 88
              ++  +HV H C
Sbjct: 86  TREIAEKLHVSHTC 99


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 24  SRNACLFTVIKSCSVRLTK*YNTNDRHAPSKKR 122
           SRN  L  VIK  +V   +  N+     P K+R
Sbjct: 763 SRNKALLPVIKPANVNKEQSPNSTKETTPKKER 795


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
 Frame = +1

Query: 598 HSAHEPVPEHRRDRGL-PHQPRNTPLAEGPTATPGLVAAGRGVLQH 732
           HS     P H       PH   +TPLA   ++ P  +  G     H
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPLAH--SSYPAAIQIGHTPHHH 466


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 550 SPVQRVAGVCELPPGVHSAHEPVPEHRRDRGLPHQPRNTP 669
           S V+  AG  +LPP   +   P+P      G+P  P N P
Sbjct: 399 SAVRSPAGG-QLPPSAGAPMPPIPNMSNMSGMPPLP-NMP 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,791
Number of Sequences: 438
Number of extensions: 5433
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)