Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_B14
         (925 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.97 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.8  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 354 PILTRRKVTNXHPRQNWSFXSQG*MNSFKLFXPPNP 461
           P L   K    HP  N +F   G  N+  +F P  P
Sbjct: 199 PPLVGWKDKRSHPAYNMTFAQNGPFNTTTIFVPVKP 234


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 458  PSLGSTPRNXGNPPVFXPT 514
            P L  TP N  NPP F P+
Sbjct: 1154 PHLPFTPFNFWNPPPFMPS 1172


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 450 PPNPPXXPPP 479
           PPNP   PPP
Sbjct: 39  PPNPSQGPPP 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,367
Number of Sequences: 438
Number of extensions: 6350
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)