Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_B13
(799 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 3e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 34 0.001
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 29 0.038
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 28 0.087
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 28 0.087
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.12
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 28 0.12
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.15
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 27 0.20
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 27 0.20
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 27 0.27
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 26 0.35
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.47
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.47
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.47
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.47
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 26 0.47
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 0.62
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 24 1.4
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 2.5
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 5.7
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.3 bits (80), Expect = 3e-04
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = +2
Query: 113 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQADLQ 277
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 278 MNWIDKRLSWNA 313
+ W L+W +
Sbjct: 88 LMWEQSHLTWKS 99
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 34.3 bits (75), Expect = 0.001
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQADLQMNW 286
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSWNAG 316
+D+RL++ G
Sbjct: 62 VDRRLAFQGG 71
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 29.5 bits (63), Expect = 0.038
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLN-AXATTAGDYALRARVSNNGS 446
+ RLW+PDV++ N A G Y V NNG+
Sbjct: 100 IPPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGT 135
Score = 22.2 bits (45), Expect = 5.7
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Frame = +2
Query: 92 AIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTV 256
A+A++ + +++ LL TY+ P +V++ L L ++ E +
Sbjct: 11 ALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLL 70
Query: 257 RIQADLQMNWIDKRLSWNAGXVG 325
L++ W D + WN G
Sbjct: 71 ITNLWLKLEWNDVNMRWNVSDYG 93
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 28.3 bits (60), Expect = 0.087
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLN-AXATTAGDYALRARVSNNGS 446
++ +LW+PD+++ N A G Y V++NGS
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
Score = 25.8 bits (54), Expect = 0.47
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 325
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 28.3 bits (60), Expect = 0.087
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLN-AXATTAGDYALRARVSNNGS 446
++ +LW+PD+++ N A G Y V++NGS
Sbjct: 131 ITPNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGS 166
Score = 25.8 bits (54), Expect = 0.47
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 325
++ E + A L++ W+D L WN G
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 124
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 27.9 bits (59), Expect = 0.12
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLN-AXATTAGDYALRARVSNNGS 446
++ +LW+PD+++ N A G Y V++NGS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGS 98
Score = 25.8 bits (54), Expect = 0.47
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.9 bits (59), Expect = 0.12
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQADLQMNWIDKR 298
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 299 LSWN 310
L +N
Sbjct: 95 LRFN 98
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 27.5 bits (58), Expect = 0.15
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAXATTAGDYALRARVSNNGSV 449
V S+ +WRPD+VL NA A +A + + G V
Sbjct: 105 VPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLV 141
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 27.1 bits (57), Expect = 0.20
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLL-NAXATTAGDYALRARVSNNGSV 449
V S+ +WRPD+VL NA A +A ++ G V
Sbjct: 101 VPSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRV 137
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.1 bits (57), Expect = 0.20
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLN 386
G T V SE +W PD+VL N
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYN 111
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 26.6 bits (56), Expect = 0.27
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 342 VSSERLWRPDVVLLN 386
V S+ +WRPD+VL N
Sbjct: 105 VPSDHIWRPDIVLYN 119
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 26.2 bits (55), Expect = 0.35
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 318 EWGCSTWL-VSSERLWRPDVVLLN 386
E+G T L V SE +W PD+VL N
Sbjct: 88 EYGGVTELYVPSEHIWLPDIVLYN 111
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.47
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 25.8 bits (54), Expect = 0.47
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLN-AXATTAGDYALRARVSNNGS 446
++ +LW+PD+++ N A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.47
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 25.8 bits (54), Expect = 0.47
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLN-AXATTAGDYALRARVSNNGS 446
++ +LW+PD+++ N A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.47
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 25.8 bits (54), Expect = 0.47
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLN-AXATTAGDYALRARVSNNGS 446
++ +LW+PD+++ N A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.47
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 25.8 bits (54), Expect = 0.47
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLN-AXATTAGDYALRARVSNNGS 446
++ +LW+PD+++ N A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.8 bits (54), Expect = 0.47
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 230 NIRESESTVRIQADLQMNWIDKRLSWNAGXVG 325
++ E + A L++ W+D L WN G
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYG 56
Score = 25.8 bits (54), Expect = 0.47
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 342 VSSERLWRPDVVLLN-AXATTAGDYALRARVSNNGS 446
++ +LW+PD+++ N A G Y V+++GS
Sbjct: 63 ITPNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGS 98
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.4 bits (53), Expect = 0.62
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 324 GCSTWLVSSERLWRPDVVLLN 386
G V SE +W PD+VL N
Sbjct: 104 GVEMLYVPSENIWLPDIVLYN 124
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 24.2 bits (50), Expect = 1.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 351 ERLWRPDVVLLNAXATTAGDYALR 422
+++W+PD+VL N G+Y +R
Sbjct: 106 DKVWKPDIVLFN---NADGNYEVR 126
Score = 23.8 bits (49), Expect = 1.9
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 191 KIVVNLTL-HLRHANIRESESTVRIQADLQMNWIDKRLSWNAGXVG 325
K+ VN L ++ N+ E ++ L+ W D +L W+ G
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYG 96
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 342 VSSERLWRPDVVLLN 386
V R+WRPD +L N
Sbjct: 82 VPYNRVWRPDTILYN 96
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 22.2 bits (45), Expect = 5.7
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 351 ERLWRPDVVLLN 386
ER+WRPD N
Sbjct: 115 ERIWRPDTYFYN 126
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,355
Number of Sequences: 438
Number of extensions: 4051
Number of successful extensions: 34
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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