Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_B11
(822 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 27 2.4
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 3.2
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 26 5.6
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 26 7.4
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha... 26 7.4
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo... 26 7.4
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 7.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 7.4
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual 25 9.8
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 9.8
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Frame = +1
Query: 31 QFIAKEAGALFDSSLLEDT-PSSSTNGT----ETLVPE--DNLYALMPPFETFLNVDKTA 189
+F+ ++G++ + +D P SS++ +T+ P +N Y + P + + +
Sbjct: 64 KFLQGKSGSVKVQEIPQDQLPKSSSDNAVTDRKTISPSGINNQYVIRNPKDVYYATVQAG 123
Query: 190 RLRHFFDNVKTGELI 234
+L H FD VKT EL+
Sbjct: 124 KL-HLFDPVKTSELL 137
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +1
Query: 67 SSLLEDTPSSSTNGTETLVPEDNLYALMPPFETFLNVDKTARLRHFFDNVKTGELIIGAV 246
SSL +PS ST G E + +D Y L+ +E ++ A + H F + + A
Sbjct: 1603 SSLRNVSPSESTGGYEGCIFDDQQYQLL--YELCERLEDHAAILHGFPEPPPCDTGLAAP 1660
Query: 247 INR 255
+N+
Sbjct: 1661 VNQ 1663
>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 286 CTAGPTSRYVADINVKAFLPVGNIIQAVDKKNVSRNY 396
C+ PTS+ A I +A + V N+ V+ KN++ +Y
Sbjct: 341 CSGLPTSKTYAAITAQAPVMVHNLWSFVNGKNLTASY 377
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1
Query: 88 PSSSTNGTETLVP 126
P+ STNGTET +P
Sbjct: 547 PNGSTNGTETFIP 559
>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 151 PPFETFLNVDKTARLRHFFDNVKTGELIIGAVINRTASGMMLKV 282
P F FLN+DK F+ + EL G++ R S + KV
Sbjct: 35 PSFADFLNMDKPLTADEAFELDRKVELPNGSIHKRLPSWLKTKV 78
>SPMIT.08 |||mitochondrial ribosomal small
subunit|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 227
Score = 25.8 bits (54), Expect = 7.4
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = -2
Query: 260 AVLLITAPMISSPVFTLSKKCLNLAVLSTFKNVSNGGINAYKLSSGTRVSVPLVDDEGVS 81
A+++ + P I+S ++ K+ +NL L + G+N K G +S+ L+ +S
Sbjct: 120 AIIIGSNPKIASTLWIDPKRFINLPKLQSDSIFKILGLNVPKGWKGIHISLNLIKWNSLS 179
Query: 80 SSKEESNKAPASLAM 36
S +N S+ +
Sbjct: 180 SRGRITNIIKGSVPL 194
>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 220
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -2
Query: 290 VQRTLSIIPDAVLLITAPMISSPVFTLSKKCLNLAVLSTFKNVSNGGIN 144
+ R++S+ P I+ P ISS L KK + + +TF + +N +N
Sbjct: 74 MNRSISVPPTN---ISVPQISSNPLNLMKKSSDNDIFTTFNDTTNDCMN 119
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 7.4
Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 2/144 (1%)
Frame = -2
Query: 476 TPFMPQTILSVSGITSMTSQQTVSFIR*FLDTFFLSTA*IIFPTG--KKALTLMSATYLE 303
TP T L+ S T +TS V+ + L+++ I + + + S++ L
Sbjct: 3418 TPITSSTALNTS--TPITSSTVVNSSTPITSSSVLNSSTAIASSSILNSSTPITSSSVLN 3475
Query: 302 VGPAVQRTLSIIPDAVLLITAPMISSPVFTLSKKCLNLAVLSTFKNVSNGGINAYKLSSG 123
+ + ++I +V++ ++ ++S +S LN ++LS S+GG ++ S+G
Sbjct: 3476 SSTPISSS-TVITSSVVIGSSSVLSYASSIVSSVSLNSSLLS-----SSGGFSSSAFSTG 3529
Query: 122 TRVSVPLVDDEGVSSSKEESNKAP 51
+ S L + G SS + +P
Sbjct: 3530 SS-SFSLTSENGSVSSSSLVSSSP 3552
>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 9.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 568 MKGENYEAILEKSPGFNNPNCIQFLSEHLGIXNMHCTNFS 687
M E Y AI+ + G N I+ LSE +HC + S
Sbjct: 1 MAEEGYVAIVTGATGLNGAAIIKRLSEDDNCKTIHCISRS 40
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 313 VADINVKAFLPVGNIIQAVDKKNVSRNYLMNDTV 414
+AD NV+ F P+ I K+NV L+ ++
Sbjct: 62 IADENVRIFPPLHKTIDWAKKRNVEEQNLIEQSI 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,270
Number of Sequences: 5004
Number of extensions: 59472
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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