Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_B11
         (822 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53139-9|AAW88402.1|  379|Caenorhabditis elegans Serpentine rece...    29   3.0  
U53139-8|AAK18938.3|  338|Caenorhabditis elegans Serpentine rece...    29   3.0  
U80839-9|AAB37922.2|  302|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z92789-5|CAB07217.1|  397|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AF022971-5|AAG23972.2|  241|Caenorhabditis elegans Hypothetical ...    28   9.3  

>U53139-9|AAW88402.1|  379|Caenorhabditis elegans Serpentine
           receptor, class w protein68, isoform b protein.
          Length = 379

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 638 SSLNILALXTCTAQISHI*XEXSLHRNTXMNYAKHKQVMGISFC 769
           SSLNI  + +C   + +I     L R + +N + H  ++GIS C
Sbjct: 33  SSLNIFFVLSCVGVVVNIFHLFILTRKSMVNNSIHVMMIGISVC 76


>U53139-8|AAK18938.3|  338|Caenorhabditis elegans Serpentine
           receptor, class w protein68, isoform a protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 638 SSLNILALXTCTAQISHI*XEXSLHRNTXMNYAKHKQVMGISFC 769
           SSLNI  + +C   + +I     L R + +N + H  ++GIS C
Sbjct: 33  SSLNIFFVLSCVGVVVNIFHLFILTRKSMVNNSIHVMMIGISVC 76


>U80839-9|AAB37922.2|  302|Caenorhabditis elegans Hypothetical
           protein ZC204.7 protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 355 IIQAVDKKNVSRNYLMNDTVC 417
           I + +D +N+ R+Y  NDTVC
Sbjct: 253 IFEGIDVENLERDYRSNDTVC 273


>Z92789-5|CAB07217.1|  397|Caenorhabditis elegans Hypothetical
           protein H02I12.3 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/31 (32%), Positives = 23/31 (74%)
 Frame = -2

Query: 278 LSIIPDAVLLITAPMISSPVFTLSKKCLNLA 186
           ++I+ + ++++++P +SSPV    K C++LA
Sbjct: 56  VAILGNGLIVLSSPWLSSPVSPYLKLCISLA 86


>AF022971-5|AAG23972.2|  241|Caenorhabditis elegans Hypothetical
           protein C31B8.9 protein.
          Length = 241

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = +1

Query: 103 NGTETLVPEDNLYALMPPFETFLNVDKTARLRHFFDNVKTGELIIGAVINRTASGMMLKV 282
           N T  L+P D++   +PPF   LN D           V  G  + G ++ ++ S +   +
Sbjct: 43  NFTTELIPGDSITKFIPPFVPLLN-DYV---------VAEGYSLHGCIVRKSMSQLNTNI 92

Query: 283 LCTAGPTSRY 312
           +C    TS Y
Sbjct: 93  MCYLNNTSLY 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,039,538
Number of Sequences: 27780
Number of extensions: 339172
Number of successful extensions: 934
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)