Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_B09
(835 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.16
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 33 0.37
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.5
12_01_0524 - 4167867-4168445 29 3.5
01_03_0102 - 12565917-12566258 29 4.6
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.0
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 8.0
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.0
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.0
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.0
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.16
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 345 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 181
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 32.7 bits (71), Expect = 0.37
Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Frame = -2
Query: 774 GXXPGXXGPXPPXAXPGGGXPEXXCGXXP---XGXSXLAPGAGXXTPLDRAGHIPRS 613
G P PGGG P C P G S PG G P G +P S
Sbjct: 335 GDVPPSPSSDTSPTTPGGGSPSTPCDTPPSPSSGTSPTTPGGGYYPPTPSVGDVPPS 391
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 398 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 550
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 342 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 163
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 162 CEERVDHEGQ*C 127
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>01_03_0102 - 12565917-12566258
Length = 113
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 729 PGGGXPEXXCGXXPXGXSXLAPGAGXXTPLDRAGHI 622
P G P+ G P S + PGAG +PL G +
Sbjct: 68 PNGVTPQVGFGGMPGSSSSVFPGAGGASPLTPGGGV 103
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 243 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 359
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 249 VHRANTGRSSNELDRQTTELERRGVG 326
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 78 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 218
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 427 GRGERSPRRWLQPRLAVPRQASTSVPRTP 341
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 424 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 302
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,344,925
Number of Sequences: 37544
Number of extensions: 540558
Number of successful extensions: 1660
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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