Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_B07
(783 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 34 0.100
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 34 0.13
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 32 0.40
U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protei... 32 0.53
Z99283-7|CAB16537.2| 985|Caenorhabditis elegans Hypothetical pr... 31 0.93
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 31 0.93
Z92782-14|CAI46605.1| 985|Caenorhabditis elegans Hypothetical p... 31 0.93
U41748-3|AAA83336.1| 452|Caenorhabditis elegans Dumpy : shorter... 31 0.93
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 31 0.93
X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein. 31 1.2
U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter... 31 1.2
AL032634-3|CAE45092.1| 412|Caenorhabditis elegans Hypothetical ... 31 1.2
AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen prot... 31 1.2
Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 30 1.6
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 30 1.6
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 30 1.6
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 29 2.8
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 29 3.7
AC024746-14|AAF60406.1| 227|Caenorhabditis elegans Hypothetical... 29 3.7
AC024746-13|AAF60407.2| 480|Caenorhabditis elegans Hypothetical... 29 3.7
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 29 5.0
U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical pr... 29 5.0
U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical pr... 29 5.0
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 29 5.0
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 28 6.6
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 28 8.7
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 28 8.7
AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen prot... 28 8.7
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 34.3 bits (75), Expect = 0.100
Identities = 27/77 (35%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Frame = +3
Query: 279 VSPPGGPHLRATDCRGDPPGPLGLGESRPRTSHLPSDAGAHGTRLFRSLPAPRRPEG--A 452
V+P G C PPGP G P P +AGA G F P P P G
Sbjct: 128 VNPQTGRDSFCITCPAGPPGPAGT----PGAPGAPGNAGAPGQDSFGGGPGPAGPTGPTG 183
Query: 453 DAEVPPLQWLQRGHGGA 503
DA P Q GH G+
Sbjct: 184 DAGAPG----QPGHPGS 196
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/59 (33%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +3
Query: 288 PGGPHLRATDCRGDPPGPLGL-GESRPRTSHLPSDAGAHGTRLFRSLPAPRRPEGADAE 461
P GP DC PPGP G G+ P S P G G P P P G +
Sbjct: 161 PAGPDSFCFDCPAGPPGPSGAPGQKGP--SGAPGQPGRSGGASLPGPPGPAGPPGPSGQ 217
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 32.3 bits (70), Expect = 0.40
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = +3
Query: 249 SISACRARGVVSPPGGPHLRATDCRGDPPGPLG-LGESRPR-TSHLPSDAGAHGTRLFRS 422
++ C G+ PG P + PPGP G G P T L + G + R S
Sbjct: 194 AVGPCGPSGIPGLPGNPGYTSPPGLPGPPGPCGEAGREGPNGTPGLKGEPGNNSIRQI-S 252
Query: 423 LPAPRRPEGADAEVPP 470
LP + P G + P
Sbjct: 253 LPGRKGPPGLPGQCGP 268
>U80451-8|AAB37842.2| 288|Caenorhabditis elegans Collagen protein
20 protein.
Length = 288
Score = 31.9 bits (69), Expect = 0.53
Identities = 32/98 (32%), Positives = 35/98 (35%), Gaps = 1/98 (1%)
Frame = +3
Query: 270 RGVVSPPGGPHLRATDCRGDPPGPLGLGESRPRTSHLPSDAGAHGT-RLFRSLPAPRRPE 446
+G PPGG RG P GP G G + AG GT RSLP+P
Sbjct: 158 KGPPGPPGGHGEPGPAGRGGPRGPPGPGGPQGEAGE-DGGAGNPGTPGQVRSLPSPPGEP 216
Query: 447 GADAEVPPLQWLQRGHGGAHARVLHRFRGAXPRPXCKN 560
G E G GA R H R P P N
Sbjct: 217 GQPGEPG-----GPGEPGADGRPGHPGRAGPPGPPGDN 249
>Z99283-7|CAB16537.2| 985|Caenorhabditis elegans Hypothetical
protein Y70C5C.1 protein.
Length = 985
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 494 VSSLQPLQWWHFGVGSLRATRCR*RPK-QPCPVSTCVARKVRR 369
+ S P QW H + LRA R + K QP +++CVA +++R
Sbjct: 364 MQSSGPKQWVHEELAELRAVTFRFKDKEQPMAMASCVAARLQR 406
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 31.1 bits (67), Expect = 0.93
Identities = 18/44 (40%), Positives = 19/44 (43%)
Frame = +3
Query: 273 GVVSPPGGPHLRATDCRGDPPGPLGLGESRPRTSHLPSDAGAHG 404
G PG P T PPGP G G + H P DAGA G
Sbjct: 210 GQPGQPGEPGHSDTSSTAGPPGPPGPGGPPGQDGH-PGDAGAPG 252
>Z92782-14|CAI46605.1| 985|Caenorhabditis elegans Hypothetical
protein Y70C5C.1 protein.
Length = 985
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 494 VSSLQPLQWWHFGVGSLRATRCR*RPK-QPCPVSTCVARKVRR 369
+ S P QW H + LRA R + K QP +++CVA +++R
Sbjct: 364 MQSSGPKQWVHEELAELRAVTFRFKDKEQPMAMASCVAARLQR 406
>U41748-3|AAA83336.1| 452|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 8 protein.
Length = 452
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 243 ETSISACRARGVVSPPGGPHLRATDCRGDPPGPLGLGESRPRTSHLPSDAGAHG 404
+T ++ +G + PPG ++ PPGP G G ++P P D G G
Sbjct: 202 DTVVAGVGIKGPLGPPGPQGMKG------PPGPSGKGSNQPGQPGQPGDIGGIG 249
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 31.1 bits (67), Expect = 0.93
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +3
Query: 285 PPGGPHLRATD---CRGDPPGPLGLGESRPRTSHLPSDAGAHGTRLFRSLPAPRRPEGAD 455
P G P +T+ R PP P G G P + P D A G + S P P+G
Sbjct: 172 PTGEPQDLSTEGNASRRPPPPPKGTGTPPPPPTGEPQDLSAEG---YASRRPPPPPKGTG 228
Query: 456 AEVPP 470
+ PP
Sbjct: 229 SPTPP 233
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Frame = +3
Query: 270 RGVVSPPGGPHLRATDCRGD-------PPGPLGLGESRPRTSHLPSDAGAHGTRLFRSLP 428
+G +PP P D G+ PP P G G P + P D A R P
Sbjct: 38 KGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGTPPPPPTGEPQDLSAEEGNASRRPP 97
Query: 429 APRRPEGADAEVPP 470
P P+G PP
Sbjct: 98 PP--PKGTGTPPPP 109
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Frame = +3
Query: 270 RGVVSPPGGPHLRATDCRGD-------PPGPLGLGESRPRTSHLPSDAGAHGTRLFRSLP 428
+G SPP P D G+ PP P G G P + P D G R P
Sbjct: 132 KGTGSPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSTEG-NASRRPP 190
Query: 429 APRRPEGADAEVPP 470
P P+G PP
Sbjct: 191 PP--PKGTGTPPPP 202
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Frame = +3
Query: 270 RGVVSPPGGPHLRATDCRGD-------PPGPLGLGESRPRTSHLPSDAGAHGTRLFRSLP 428
+G +PP P D G+ PP P G G P + P D G R P
Sbjct: 101 KGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTGEPQDLSGEG-NASRRPP 159
Query: 429 APRRPEGADAEVPP 470
P P+G + PP
Sbjct: 160 PP--PKGTGSPPPP 171
>X64435-1|CAA45773.1| 318|Caenorhabditis elegans collagen protein.
Length = 318
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +3
Query: 273 GVVSPPGGPHLRATDCRG--DPPGPLGLGESRPRTSHLPS-DAGAHGTRLFRSLPAPRRP 443
G+ PPG + T +G PPGP G + P ++ LPS ++G G P P P
Sbjct: 198 GIKGPPGDDSIGGTGIKGPPGPPGPRG-PKGPPGSNGLPSQNSGPPGPIGEMGPPGPPGP 256
Query: 444 EG 449
G
Sbjct: 257 RG 258
>U41624-3|AAF99944.1| 318|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 7 protein.
Length = 318
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +3
Query: 273 GVVSPPGGPHLRATDCRG--DPPGPLGLGESRPRTSHLPS-DAGAHGTRLFRSLPAPRRP 443
G+ PPG + T +G PPGP G + P ++ LPS ++G G P P P
Sbjct: 198 GIKGPPGDDSIGGTGIKGPPGPPGPRG-PKGPPGSNGLPSQNSGPPGPIGEMGPPGPPGP 256
Query: 444 EG 449
G
Sbjct: 257 RG 258
>AL032634-3|CAE45092.1| 412|Caenorhabditis elegans Hypothetical
protein Y39G8C.4 protein.
Length = 412
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = +3
Query: 273 GVVSPPGGPHLRATDCRGDPPGPLGLGESRPRTSHLPSDAGAHG 404
G V PPG R G PPG +G G P +P GA G
Sbjct: 222 GPVGPPGDSGERGNIHEGGPPGIVG-GSGAPGVHGIPGPPGAPG 264
>AF036699-4|AAB88358.1| 281|Caenorhabditis elegans Collagen protein
104 protein.
Length = 281
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = +3
Query: 291 GGPHLRATDCRGDPPGPLGLG--ESRPRTSHLPSDAGAHGTRLFRSLPAPRRPEG 449
G P LR D PG G G P + P D G G+ + P P+ P G
Sbjct: 160 GAPGLRGPDGHPGHPGNPGYGGEPGAPGNNGEPGDKGRDGSHGTKGAPGPQGPSG 214
>Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical
protein F57B1.4 protein.
Length = 317
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +3
Query: 294 GPHLRATDCRGDPPGPLGL-GESRPRTSHLPSDAGAHGTRLFRSLPAPRRPEGADAE 461
GP DC PPGP G G+ P S P G G P P P G +
Sbjct: 166 GPDSFCFDCPAGPPGPSGAPGQKGP--SGAPGAPGQSGGASLPGPPGPAGPPGPSGQ 220
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.2 protein.
Length = 316
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = +3
Query: 294 GPHLRATDCRGDPPGPLGL-GESRPRTSHLPSDAGAHGTRLFRSLPAPRRPEG 449
GP DC PPGP G G+ P S P G G P P P G
Sbjct: 165 GPDSFCFDCPAGPPGPSGAPGQKGP--SGAPGAPGQSGGAALPGPPGPAGPPG 215
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.1 protein.
Length = 316
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = +3
Query: 294 GPHLRATDCRGDPPGPLGL-GESRPRTSHLPSDAGAHGTRLFRSLPAPRRPEG 449
GP DC PPGP G G+ P S P G G P P P G
Sbjct: 165 GPDSFCFDCPAGPPGPSGAPGQKGP--SGAPGAPGQSGGAALPGPPGPAGPPG 215
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = +3
Query: 294 GPHLRATDCRGDPPGPLGL-GESRPRTSHLPSDAGAHGTRLFRSLPAPRRPEG 449
GP DC PPGP G G+ P S P G G P P P G
Sbjct: 165 GPDSFCFDCPAGPPGPSGAPGQKGP--SGAPGAPGQSGGAALPGPPGPAGPPG 215
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = +3
Query: 294 GPHLRATDCRGDPPGPLGL-GESRPRTSHLPSDAGAHGTRLFRSLPAPRRPEG 449
GP DC PPGP G G+ P S P G G P P P G
Sbjct: 165 GPDSFCFDCPAGPPGPSGAPGQKGP--SGAPGAPGQSGGAALPGPPGPAGPPG 215
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical
protein F57B1.3 protein.
Length = 313
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +3
Query: 294 GPHLRATDCRGDPPGPLGL-GESRPRTSHLPSDAGAHGTRLFRSLPAPRRPEGADAE 461
GP DC PPGP G G+ P S P G G P P P G +
Sbjct: 162 GPDSFCFDCPAGPPGPSGAPGQKGP--SGAPGVPGQTGGASLPGPPGPAGPPGPSGQ 216
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 29.1 bits (62), Expect = 3.7
Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
Frame = +3
Query: 273 GVVSPPGGPHLRATDCRGDPPGPLGLGESRPRTSHLP---SDAGAHGTRLFRSLPAPRRP 443
G + P P C PPGP G P LP DAG G LP P P
Sbjct: 141 GALLPGPPPKPPCQKCPPGPPGPAG----PPGPKGLPGPQGDAGTSGQDGVPGLPGPPGP 196
Query: 444 EGADAEVPPLQWLQRGHGGAHARVLHRFRGAXPRP 548
G P + ++G G +V++ GA P P
Sbjct: 197 SGPQG-APGVPG-EKGPTGEPGKVIN---GAPPGP 226
>AC024746-14|AAF60406.1| 227|Caenorhabditis elegans Hypothetical
protein Y110A2AL.12b protein.
Length = 227
Score = 29.1 bits (62), Expect = 3.7
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +1
Query: 274 AWSRRLADPTYGRRTVEAIRPVLSDWVNRDRGRLTFRATQVLTGHGCFGRYLHLVA--RR 447
AW + G + P LSD +NR L F + VLT G L L+A R
Sbjct: 152 AWCSSFPQFSNGEDPYSVVSPCLSDSINR-HSLLFFLVSNVLT--GLVNSRLMLIASLRT 208
Query: 448 EPTPKCHHCSGC 483
P+P H S C
Sbjct: 209 LPSPFSWHMSLC 220
>AC024746-13|AAF60407.2| 480|Caenorhabditis elegans Hypothetical
protein Y110A2AL.12a protein.
Length = 480
Score = 29.1 bits (62), Expect = 3.7
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +1
Query: 274 AWSRRLADPTYGRRTVEAIRPVLSDWVNRDRGRLTFRATQVLTGHGCFGRYLHLVA--RR 447
AW + G + P LSD +NR L F + VLT G L L+A R
Sbjct: 405 AWCSSFPQFSNGEDPYSVVSPCLSDSINR-HSLLFFLVSNVLT--GLVNSRLMLIASLRT 461
Query: 448 EPTPKCHHCSGC 483
P+P H S C
Sbjct: 462 LPSPFSWHMSLC 473
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 28.7 bits (61), Expect = 5.0
Identities = 25/84 (29%), Positives = 27/84 (32%)
Frame = +3
Query: 249 SISACRARGVVSPPGGPHLRATDCRGDPPGPLGLGESRPRTSHLPSDAGAHGTRLFRSLP 428
SIS+ G PPG P G PGP G P P AGA G
Sbjct: 167 SISSPGPAGPAGPPGPPGPDGAPGGGSGPGPAG-PAGPPGPDGNPGSAGADGQPGGPGQD 225
Query: 429 APRRPEGADAEVPPLQWLQRGHGG 500
+ A PP G GG
Sbjct: 226 GAPGSDAAYCPCPPRSGAIAGGGG 249
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 28.7 bits (61), Expect = 5.0
Identities = 25/84 (29%), Positives = 27/84 (32%)
Frame = +3
Query: 249 SISACRARGVVSPPGGPHLRATDCRGDPPGPLGLGESRPRTSHLPSDAGAHGTRLFRSLP 428
SIS+ G PPG P G PGP G P P AGA G
Sbjct: 167 SISSPGPAGPAGPPGPPGPDGAPGGGSGPGPAG-PAGPPGPDGNPGSAGADGQPGGPGQD 225
Query: 429 APRRPEGADAEVPPLQWLQRGHGG 500
+ A PP G GG
Sbjct: 226 GAPGSDAAYCPCPPRSGAIAGGGG 249
>U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical
protein D1044.2c protein.
Length = 1090
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -3
Query: 544 RGXAPRKRCSTRACAPPCPRCSHCSGGT 461
+G + CS P C C HCS GT
Sbjct: 312 KGDTCDQECSNGEWGPDCAYCCHCSEGT 339
>U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical
protein D1044.2a protein.
Length = 1051
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -3
Query: 544 RGXAPRKRCSTRACAPPCPRCSHCSGGT 461
+G + CS P C C HCS GT
Sbjct: 312 KGDTCDQECSNGEWGPDCAYCCHCSEGT 339
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 294 GPHLRATDCRGDPPGPLGL-GESRPRTSHLPSDAGAHGTRLFRSLPAPRRPEGA 452
GP DC PPGP G G+ P S P GA G +LP P P G+
Sbjct: 200 GPDSFCFDCPAGPPGPSGAPGQKGP--SGAP---GAPGQSGGSALPGPPGPAGS 248
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 28.3 bits (60), Expect = 6.6
Identities = 33/102 (32%), Positives = 36/102 (35%), Gaps = 5/102 (4%)
Frame = +3
Query: 270 RGVVSPPGGPHLRATDCRG---DPPGPLG-LGESRP-RTSHLPSDAGAHGTRLFRSLPAP 434
+G PPGGP RG PPGP G GE+ P P AG RS P+P
Sbjct: 153 KGPPGPPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEGGRPGQAGQ-----TRSAPSP 207
Query: 435 RRPEGADAEVPPLQWLQRGHGGAHARVLHRFRGAXPRPXCKN 560
G E G G R H R P P N
Sbjct: 208 PGQPGQPGEPG-----SPGEPGPDGRAGHPGRNGPPGPPGDN 244
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 28.3 bits (60), Expect = 6.6
Identities = 33/102 (32%), Positives = 36/102 (35%), Gaps = 5/102 (4%)
Frame = +3
Query: 270 RGVVSPPGGPHLRATDCRG---DPPGPLG-LGESRP-RTSHLPSDAGAHGTRLFRSLPAP 434
+G PPGGP RG PPGP G GE+ P P AG RS P+P
Sbjct: 153 KGPPGPPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEGGRPGQAGQ-----TRSAPSP 207
Query: 435 RRPEGADAEVPPLQWLQRGHGGAHARVLHRFRGAXPRPXCKN 560
G E G G R H R P P N
Sbjct: 208 PGQPGQPGEPG-----SPGEPGPDGRAGHPGRNGPPGPPGDN 244
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -1
Query: 402 REHLRRSEGETSSVAIHPVRED-RADRLDSPSPVGGV-RQAARPR 274
R+ RRS +SS + PVRE R SPSP + R+A+R R
Sbjct: 111 RKRSRRSRSRSSSRSRSPVRESRRRSESRSPSPKRDLKREASRSR 155
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/67 (29%), Positives = 26/67 (38%)
Frame = +3
Query: 270 RGVVSPPGGPHLRATDCRGDPPGPLGLGESRPRTSHLPSDAGAHGTRLFRSLPAPRRPEG 449
+G PG P + PPGP G + P LP + GA G + + P P
Sbjct: 200 KGPNGEPGAPGTPGGNALPGPPGPPG-PQGPPGADGLPGNPGAPGVP-GQVIEVPGTPGP 257
Query: 450 ADAEVPP 470
A PP
Sbjct: 258 AGPPGPP 264
>AF036699-5|AAB88359.1| 290|Caenorhabditis elegans Collagen protein
105 protein.
Length = 290
Score = 27.9 bits (59), Expect = 8.7
Identities = 27/80 (33%), Positives = 30/80 (37%)
Frame = +3
Query: 267 ARGVVSPPGGPHLRATDCRGDPPGPLGLGESRPRTSHLPSDAGAHGTRLFRSLPAPRRPE 446
A G + PG P R D PPGP G P LP G G + P R
Sbjct: 152 APGDIGQPGNPGERGMDGEPGPPGPTG----PPGEPGLPGAQGITGQPGVNAEPVAYR-- 205
Query: 447 GADAEVPPLQWLQRGHGGAH 506
A A PP + G GAH
Sbjct: 206 -AGAPGPP---GEPGPPGAH 221
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,272,132
Number of Sequences: 27780
Number of extensions: 289226
Number of successful extensions: 1143
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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