Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_B06
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 129 4e-31
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 41 2e-04
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 31 0.15
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 28 1.8
SPBC800.12c |||ubiquitin family protein, unknown|Schizosaccharom... 27 2.4
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 27 2.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 4.2
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 26 5.5
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 26 7.3
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 26 7.3
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 25 9.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.6
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 129 bits (312), Expect = 4e-31
Identities = 64/154 (41%), Positives = 98/154 (63%)
Frame = +2
Query: 350 DAQPRSADHFQRALLANPSASQLWIAYMAFHLQATEIEKARAVARKALSTISFREEDEKL 529
D P +A F+R LL++P++S LWI+YMA+HL E+++AR V ++ALSTI++REEDEKL
Sbjct: 1420 DEIPSTAADFERQLLSSPNSSLLWISYMAYHLNLNELQEAREVGKRALSTINYREEDEKL 1479
Query: 530 NVWLALINLENRFGTKESQQKTLEEALQMNDTFKVHSKLLDIYVDTGKQQELSALVXLML 709
NVW+AL+NLE +GT++S ++ +EA D V+ KL I + GK + LML
Sbjct: 1480 NVWMALLNLEVAYGTEDSLKEVFKEACAYCDALIVYEKLCGILIKGGKVDLADEYMQLML 1539
Query: 710 RKYKRDPKTYTLCGTACYKLNLKEKAXYVLXKAL 811
+ +K+ P + T + EKA +L ++L
Sbjct: 1540 KNFKQVPSVWIQYATFLLNNDKAEKAHGLLERSL 1573
Score = 29.9 bits (64), Expect = 0.45
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Frame = +2
Query: 368 ADHFQRALLAN-PSASQLWIAYMAFHLQATEIEKARAVARKALSTISFREEDEKLNVWLA 544
AD + + +L N +WI Y F L + EKA + ++L ++ + E + +
Sbjct: 1531 ADEYMQLMLKNFKQVPSVWIQYATFLLNNDKAEKAHGLLERSLQSL---PKSEHVGIIEK 1587
Query: 545 LINLENRFGTKESQQKTLEEALQMNDTFKVHSKLLDIYVDTGKQQELSALVXLMLRK 715
LE + G E + +T+ E L ++ L ++ +D +Q+ ++V + ++
Sbjct: 1588 FAILEFKNGDPE-RGRTIFEGLL--SSYPKRLDLWNVLIDMEMKQDDPSIVRRLFQR 1641
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 40.7 bits (91), Expect = 2e-04
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 3/127 (2%)
Frame = +2
Query: 359 PRSADHFQRALLANPSASQLWIAYMAFHLQATEIEKARAVARKALSTISFREEDEKLNVW 538
P + +++Q L +P ++W A +L ++ +A + R+AL + +D KL W
Sbjct: 385 PLAIEYYQTILDCDPKQGEIWSALGHCYLMQDDLSRAYSAYRQALYHLK-DPKDPKL--W 441
Query: 539 LALINLENRFGTKESQQKTLEEALQMNDTFKVHSKLLDIYVDTG---KQQELSALVXLML 709
+ L +R+G+ E ++ + L+M+ F+ K+ +IY G KQQ A +
Sbjct: 442 YGIGILYDRYGSHEHAEEAFMQCLRMDPNFE---KVNEIYFRLGIIYKQQHKFAQSLELF 498
Query: 710 RKYKRDP 730
R +P
Sbjct: 499 RHILDNP 505
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 31.5 bits (68), Expect = 0.15
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 377 FQRALLANPSASQLWIAYMAFHLQATEIEKARAVARKAL 493
F RA + NP LW+ + L+A I + RA KAL
Sbjct: 735 FDRAKVKNPKNEFLWLELIKMELRAGNISQVRAALAKAL 773
Score = 29.9 bits (64), Expect = 0.45
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 485 KALSTISFREEDEKLNVWLALINLENRFGTKESQQKTLEEALQ 613
+A+ S R + +WL + LE +GT ES LE+A++
Sbjct: 530 RAVFAFSLRVYPKSEKLWLRAVELEKLYGTTESVCSILEKAVE 572
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 377 FQRALLANPSASQLWIAYMAFHLQATEIEKARAVARKALSTISFREEDEKLNVWLALINL 556
+++ +L +P A W+ Y A + + ++ARA+ A++ E E VW A I+
Sbjct: 457 YEKWILYDPEACAPWLGYAALETKLGDSDRARALYNLAVNQ-PILETPEL--VWKAYIDF 513
Query: 557 E 559
E
Sbjct: 514 E 514
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 416 LWIAYMAFHLQATEIEKARAVARKALSTISFREEDEKLNVWLALINLE 559
+W AY+ F + E KAR++ ++ L T + VW++ N E
Sbjct: 506 VWKAYIDFEFEEMEYGKARSIYQQLLRTA------PHVKVWISFANFE 547
Score = 25.8 bits (54), Expect = 7.3
Identities = 19/84 (22%), Positives = 38/84 (45%)
Frame = +2
Query: 362 RSADHFQRALLANPSASQLWIAYMAFHLQATEIEKARAVARKALSTISFREEDEKLNVWL 541
R+ F+RAL + + LW+ Y+ ++ I AR + +A++ + +KL W
Sbjct: 88 RARSVFERALDVDSTYIPLWLKYIECEMKNRNINHARNLFDRAVTQL---PRVDKL--WY 142
Query: 542 ALINLENRFGTKESQQKTLEEALQ 613
+ +E G ++ E L+
Sbjct: 143 KYVYMEEMLGNITGCRQVFERWLK 166
>SPBC800.12c |||ubiquitin family protein,
unknown|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 27.5 bits (58), Expect = 2.4
Identities = 22/89 (24%), Positives = 41/89 (46%)
Frame = +2
Query: 440 HLQATEIEKARAVARKALSTISFREEDEKLNVWLALINLENRFGTKESQQKTLEEALQMN 619
+L E +K VA+ I ++ ++NV ++ L+ ++ S Q + +
Sbjct: 49 NLALFEEKKVHVVAKTVRPPI--QQASTEINVQSTILELKEVLASQLSTQPSSIRLMYKG 106
Query: 620 DTFKVHSKLLDIYVDTGKQQELSALVXLM 706
V+S+LLD YVD E++ + LM
Sbjct: 107 KPL-VNSRLLDDYVDADSVSEVNLQMFLM 134
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1066
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 613 DERHFQSPLEAAGHICGHWQATGTLRASRXHAKEIQKGSKNLHAVRDSLLQTESQRESXI 792
D HF +PLE G I H+Q LR K ++ S+ + L+ ++ +E+ I
Sbjct: 909 DLTHFTAPLERYGDIVVHYQLQLLLRGELASEKRLRVWSQAANDASRRLVISKFAQETSI 968
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 554 LENRFGTKESQQKTLEEALQMNDTFKVHSKLLDIYVD--TGKQQELSALVXLMLRK 715
LEN+ K + K LEE Q N + H + D+ K +E SA + L+K
Sbjct: 1610 LENQLNEKSQRIKELEEQAQKNSSENTHDNIDDMIKQQVEEKLKENSANFDVKLKK 1665
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 377 FQRALLANPSASQLWIAYMAFH-LQATEIEKARAVARKALSTISFREEDEKLNVWLALIN 553
F+R N S S + YMA+H L + +++ + + L ++ E+ ++L LI
Sbjct: 364 FKRGATKNDSNSYYGLGYMAYHGLTSNGVDREKGM---RLINLAVMNENPHALMFLGLIR 420
Query: 554 LE 559
LE
Sbjct: 421 LE 422
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 7.3
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Frame = +1
Query: 586 TEDFRGSFADERHFQSPLEAAGHICGHWQATGT------LRASRXHAKEIQKGSKNLHAV 747
T+ F RHF+S + IC H ++ T ++ H K+ GS+ H
Sbjct: 25 TKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVLNRHVNQKHVKQNDAGSQT-HPK 83
Query: 748 RDSLLQTESQRE 783
D L + S +E
Sbjct: 84 HDKTLISSSDQE 95
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 475 GTGLLYLSSLQVERHVSYP*LAGGGVGEE 389
G G+LY+S L + S P GGG E+
Sbjct: 223 GLGVLYVSPLAISELRSTPPFVGGGAVED 251
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 9.6
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -2
Query: 723 LLYFLSMXSTSAESSCCLPVSTYMSSSFEWTLKVSFICKASSKVFCCDSLVPNLFSR 553
L F + S ++ S+ VS++ SS W+ K+S K +SK + + FS+
Sbjct: 98 LTTFETAPSIASFSNSAADVSSHSRSSSSWSAKLSRFTKHASKPSLSSNSSDSSFSK 154
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 348 VTPSRAPPTTSNEHSSPTPPPAN 416
VTP+ PPT+++ S+P PPPA+
Sbjct: 301 VTPT-VPPTSTSSTSTP-PPPAS 321
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 348 VTPSRAPPTTSNEHSSPTPPPAN 416
VTP+ PPT+++ S+P PPPA+
Sbjct: 355 VTPT-VPPTSTSSTSTP-PPPAS 375
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 363 APPTTSNEHSSPTPPPANY 419
A P++S H P+PPPA++
Sbjct: 829 ASPSSSIGHPLPSPPPADF 847
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,878
Number of Sequences: 5004
Number of extensions: 47899
Number of successful extensions: 205
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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