Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_B05
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    77   3e-15
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    69   8e-13
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.4  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 77.0 bits (181), Expect = 3e-15
 Identities = 48/138 (34%), Positives = 66/138 (47%)
 Frame = +3

Query: 96  VLALNEXYVTXMXXAXTXLGAXXVVFQMETYVYKRRADGTQVINXWSYXGXXLFWLLXRS 275
           VL   +  +  +  A + +G+  +  +ME YV+KRR+DG  +IN        +      +
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 276 *PSRTPMMCXVISSXPFGQRAVXXFAXXXGAXPIAGRAXXXAXTXXIXSAFREPRXLIVL 455
                  +C VISS P+G RAV  FA   GA  IAGR      T  I   +REPR +IV 
Sbjct: 70  TIENPADVC-VISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVT 128

Query: 456 DPGQKXPPXTXPSYVNIP 509
           DP          S+VNIP
Sbjct: 129 DPRADAQAIKEASFVNIP 146



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 29/71 (40%), Positives = 38/71 (53%)
 Frame = +1

Query: 514 IALCNXHSPLRFVDIAXPCXXKSSXSIXXMWWXLARXVLTLRGVLXXDQRWXVVXXLFFX 693
           IALC+  S L  VD+A P   K   SI   W+ LAR VL LRG +     W V+  L+F 
Sbjct: 148 IALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFY 207

Query: 694 XXPEQSXXDEQ 726
             PE+   +E+
Sbjct: 208 RDPEEIEREEE 218


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 68.9 bits (161), Expect = 8e-13
 Identities = 41/138 (29%), Positives = 64/138 (46%)
 Frame = +3

Query: 96  VLALNEXYVTXMXXAXTXLGAXXVVFQMETYVYKRRADGTQVINXWSYXGXXLFWLLXRS 275
           +L   +  +  +  A   +G+  +  +M+ YV+KRR+DG  ++N        +      +
Sbjct: 9   ILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARVIA 68

Query: 276 *PSRTPMMCXVISSXPFGQRAVXXFAXXXGAXPIAGRAXXXAXTXXIXSAFREPRXLIVL 455
                  +C V+S+  +G RAV  FA   GA  IAGR      T  I   +REPR ++V 
Sbjct: 69  TIENPADVC-VVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVT 127

Query: 456 DPGQKXPPXTXPSYVNIP 509
           DP          S+VNIP
Sbjct: 128 DPRADAQAIKEASFVNIP 145



 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 30/73 (41%), Positives = 40/73 (54%)
 Frame = +1

Query: 514 IALCNXHSPLRFVDIAXPCXXKSSXSIXXMWWXLARXVLTLRGVLXXDQRWXVVXXLFFX 693
           IALC+  S L  VDIA P   K   SI  +W+ LAR VL +RG L     W V+  L+F 
Sbjct: 147 IALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFY 206

Query: 694 XXPEQSXXDEQLR 732
             PE+   +E+ +
Sbjct: 207 RDPEEVEREEEAK 219


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 475 HPXLNLXMSTFLXIALC-NXHSPLRFVD 555
           HP + + ++ F  IALC N  SPL F D
Sbjct: 331 HPDIKIQLACFRLIALCPNVSSPLSFED 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,601
Number of Sequences: 5004
Number of extensions: 23937
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)