Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_B05
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    82   6e-16
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    79   3e-15

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 81.8 bits (193), Expect = 6e-16
 Identities = 57/159 (35%), Positives = 69/159 (43%), Gaps = 1/159 (0%)
 Frame = +3

Query: 72  ATMSGGLXVLALNEXYVTXMXXAXTXLGAXXVVFQMETYVYKRRADGTQVINXWSYXGXX 251
           A   G    L+  E  V  M  A   LG     FQME YVYKRR+DG  +IN        
Sbjct: 3   AVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEK- 61

Query: 252 LFWLLXRS*PS-RTPMMCXVISSXPFGQRAVXXFAXXXGAXPIAGRAXXXAXTXXIXSAF 428
              L  R   +   P    V S+ P+GQRAV  FA   GA  IAGR      T  + ++F
Sbjct: 62  -LQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120

Query: 429 REPRXLIVLDPGQKXPPXTXPSYVNIPXDCFVQXTLPTK 545
            EPR LI+ DP     P    +  NIP   F     P +
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMR 159



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
 Frame = +1

Query: 457 TXXKSXH-PXLNLXMSTFLXIALCNXHSPLRFVDIAXPCXXKSSXSIXXMWWXLARXVLT 633
           T  ++ H P     +     IA C+  SP+R+VDI  P   K   SI  ++W LAR VL 
Sbjct: 129 TDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQ 188

Query: 634 LRGVLXXDQRWXVVXXLFFXXXPEQSXXDEQ 726
           +RG +    +W V+  LFF   PE++   E+
Sbjct: 189 MRGTILPGHKWDVMVDLFFYRDPEEAKEQEE 219


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 57/157 (36%), Positives = 69/157 (43%), Gaps = 3/157 (1%)
 Frame = +3

Query: 84  GGLXVLALN--EXYVTXMXXAXTXLGAXXVVFQMETYVYKRRADGTQVINXWSYXGXXLF 257
           GG    AL+  E  +  M  A   LG     FQME YVYKRR DG  +IN          
Sbjct: 5   GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEK--L 62

Query: 258 WLLXRS*PS-RTPMMCXVISSXPFGQRAVXXFAXXXGAXPIAGRAXXXAXTXXIXSAFRE 434
            L  R   +   P    V S+ P+GQRAV  FA   GA  IAGR      T  + ++F E
Sbjct: 63  QLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSE 122

Query: 435 PRXLIVLDPGQKXPPXTXPSYVNIPXDCFVQXTLPTK 545
           PR LI+ DP     P    +  NIP   F     P +
Sbjct: 123 PRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMR 159



 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
 Frame = +1

Query: 457 TXXKSXH-PXLNLXMSTFLXIALCNXHSPLRFVDIAXPCXXKSSXSIXXMWWXLARXVLT 633
           T  ++ H P     +     IA C+  SP+R+VDI  P   K   SI  ++W LAR VL 
Sbjct: 129 TDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQ 188

Query: 634 LRGVLXXDQRWXVVXXLFFXXXPEQSXXDEQ 726
           +RG +    +W V+  LFF   PE++   E+
Sbjct: 189 MRGTILPGHKWDVMVDLFFYRDPEEAKEQEE 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,764,612
Number of Sequences: 37544
Number of extensions: 186452
Number of successful extensions: 199
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)