Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_B05
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...    91   1e-18

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 58/158 (36%), Positives = 74/158 (46%), Gaps = 1/158 (0%)
 Frame = +3

Query: 78  MSGGLXVLALNEXYVTXMXXAXTXLGAXXVVFQMETYVYKRRADGTQVINXWSYXGXXLF 257
           MSGG    AL E  V  +      LG+  + FQM+ YVYKRR DG  +IN        L 
Sbjct: 1   MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLL- 59

Query: 258 WLLXRS*PS-RTPMMCXVISSXPFGQRAVXXFAXXXGAXPIAGRAXXXAXTXXIXSAFRE 434
            L  R+  +   P    V+S+ P+ QRA+  FA   GA  I GR      T  I   F+E
Sbjct: 60  -LAARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKE 118

Query: 435 PRXLIVLDPGQKXPPXTXPSYVNIPXDCFVQXTLPTKI 548
           PR L++ DP       T  SYV +P   FV    P K+
Sbjct: 119 PRLLVISDPRIDHQAVTEASYVGVPVISFVNTESPLKL 156



 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
 Frame = +1

Query: 514 IALCNXHSPLRFVDIAXPCXXKSSXSIXXMWWXLARXVLTLRGVLXXDQRW-----XVVX 678
           I+  N  SPL+ +DI  PC  K   SI  MWW LAR +L LRG +     +      ++ 
Sbjct: 145 ISFVNTESPLKLIDIGVPCNNKGERSIGLMWWMLAREILILRGKISRQTGFVLEGKEIMP 204

Query: 679 XLFFXXXPEQSXXDEQLRH 735
            L+F   P ++  +E   H
Sbjct: 205 DLYFYRDPTETEKEETGAH 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,822,022
Number of Sequences: 27780
Number of extensions: 147237
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)