Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_A19
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.3  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   7.5  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   7.5  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   9.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 246 PTITXLMAGPSHDRGEHGARSIISCETGLA 157
           P +T +    + D GEH   ++   E GLA
Sbjct: 118 PDVTTVELVDATDPGEHNGDTVTDVEAGLA 147


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 154 YRSHCLLPSAATSSSHIVELVKLVRC 77
           Y +HC L  AA  S   +   +L+RC
Sbjct: 125 YANHCELHRAACHSGSSLTKSRLMRC 150


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 142 CLLPSAATSSSHIVELVKLVRCRCDEMK 59
           CL P +    SHI E  +    +C E++
Sbjct: 55  CLTPDSVFFKSHITEAFQTQCKKCTEIQ 82


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 142 CLLPSAATSSSHIVELVKLVRCRCDEMK 59
           CL P +    SHI E  +    +C E++
Sbjct: 55  CLTPDSVFFKSHITEAFQTQCKKCTEIQ 82


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 151 GMCKAGFAGD 180
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,562
Number of Sequences: 438
Number of extensions: 3354
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)