Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_A04
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = +2

Query: 599 GRAPGXXPAXXGPPGGXXTPPPXGXPPAXHPXXPP 703
           G  P    +   P  G    P  G PP   P  PP
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 620 PAXXGPPGGXXTPPPXGXPPAXHPXXPP 703
           P    PP     PPP G PP   P   P
Sbjct: 34  PQRGSPPNPSQGPPPGG-PPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 445 LSCNSLIAALRSPLTSSICTAANVNVPP 362
           +S ++L++A+RSP    +  +A   +PP
Sbjct: 392 VSMSALVSAVRSPAGGQLPPSAGAPMPP 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,233
Number of Sequences: 438
Number of extensions: 4601
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)