Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_P21
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    54   2e-08
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    29   0.93 
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    27   2.8  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    26   5.0  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   6.6  

>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
 Frame = -3

Query: 673 AXDKHMNLILGDCEEFRKLNLKIV--NCRQRRKRTLGFVLLRGENIVSLTIEGP 518
           A D  MNL+L DC+E+R +  + V  N     KR LG V+LRGE IVSL+++GP
Sbjct: 30  AFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRMLGLVILRGEFIVSLSVQGP 83


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = +3

Query: 177 INHKSLHCT*TNSVAFLEDPVLAHHDPCQEELPSFLEEGHPSWGLLAFEEEQKVDHDF-L 353
           I+ ++   T T++V  +   + A+ + C + L  ++E      GL+A E+ + V+  F L
Sbjct: 86  ISPRNRSLTSTSAVEAVPASISAYDEFCSKYLSKYMELSKKIGGLIA-EQSEHVEKAFNL 144

Query: 354 VPCVVEMARLLLWQDLEDPEVL 419
           +  V+ +A      D++ PE+L
Sbjct: 145 LRQVLSVALKAQKPDMDSPELL 166


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 673 AXDKHMNLILGDCEE 629
           A D+H+N++LGD EE
Sbjct: 38  AYDEHLNMVLGDAEE 52


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 288 EGHPSWGL-LAFEEEQKVDHDFLVPCVVEMARLLLWQDLEDPEVLRPGQCLYQQHEH 455
           +GH SW   + F+  +  D ++ +  V    +LLLW D     + RP   +Y  + H
Sbjct: 403 QGHKSWVTDVIFDAWRCDDDNYRIASVGLDRKLLLW-DFSVSAIHRPKSAVYYVNHH 458


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/56 (30%), Positives = 32/56 (57%)
 Frame = +3

Query: 255 PCQEELPSFLEEGHPSWGLLAFEEEQKVDHDFLVPCVVEMARLLLWQDLEDPEVLR 422
           P ++ELP+ L    P  G LAF +++ V +   +  V + A+L +  +L + ++LR
Sbjct: 329 PLEKELPAALPTEIPGVGDLAFFKQEDVKYFGKLLKVEDEAKLTI-AELRERKILR 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,610
Number of Sequences: 5004
Number of extensions: 43850
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)