Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_P21
(747 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 79 1e-14
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 79 1e-14
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 79 1e-14
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 79 1e-14
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 79 1e-14
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 79 1e-14
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 79 1e-14
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 79 1e-14
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 79 1e-14
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 79 1e-14
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 79 2e-14
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 79 2e-14
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 79 2e-14
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 79 2e-14
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 79 2e-14
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 79 2e-14
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 79 2e-14
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 79 2e-14
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 79 2e-14
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 79 2e-14
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 79 2e-14
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 79 2e-14
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 78 4e-14
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 74 5e-13
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 74 5e-13
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 42 0.003
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 42 0.003
X58233-1|CAA41191.1| 50|Homo sapiens 36/8-3 fusion protein wit... 33 0.82
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 31 4.4
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 31 4.4
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 31 4.4
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 31 4.4
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 31 4.4
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 31 4.4
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 31 4.4
AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 31 5.8
AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 31 5.8
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 79.4 bits (187), Expect = 1e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 9 FKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 68
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 69 GIARVPLAGAAG 80
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 110 RGVGGPSQQVMTPQGRGTVAA 130
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 79.4 bits (187), Expect = 1e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 79.4 bits (187), Expect = 1e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 79.4 bits (187), Expect = 1e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 79.4 bits (187), Expect = 1e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 79.4 bits (187), Expect = 1e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 79.4 bits (187), Expect = 1e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 79.4 bits (187), Expect = 1e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 79.4 bits (187), Expect = 1e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 79.4 bits (187), Expect = 1e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 79.0 bits (186), Expect = 2e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 79.0 bits (186), Expect = 2e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 79.0 bits (186), Expect = 2e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 79.0 bits (186), Expect = 2e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 24 FKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 83
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 84 GIARVPLAGAAG 95
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 125 RGVGGPSQQVMTPQGRGTVAA 145
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 79.0 bits (186), Expect = 2e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 24 FKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 83
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 84 GIARVPLAGAAG 95
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 125 RGVGGPSQQVMTPQGRGTVAA 145
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 79.0 bits (186), Expect = 2e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 79.0 bits (186), Expect = 2e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 79.0 bits (186), Expect = 2e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 79.0 bits (186), Expect = 2e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 79.0 bits (186), Expect = 2e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNSEQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 79.0 bits (186), Expect = 2e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 79.0 bits (186), Expect = 2e-14
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 77.8 bits (183), Expect = 4e-14
Identities = 41/72 (56%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQRR-KRTLGFVLLRGENIVSLTIEGPTSTRR 503
FKA DKHMNLIL DC EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCGEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDT 90
Query: 502 RIASCSLTGSYG 467
IA L G+ G
Sbjct: 91 GIARVPLAGAAG 102
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 390 RGVGGPSQQHMAPGNRGQLSA 328
RGVGGPSQQ M P RG ++A
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAA 152
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 74.1 bits (174), Expect = 5e-13
Identities = 36/55 (65%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQR-RKRTLGFVLLRGENIVSLTIEGP 518
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGP 85
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 74.1 bits (174), Expect = 5e-13
Identities = 36/55 (65%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLKIVNCRQR-RKRTLGFVLLRGENIVSLTIEGP 518
FKA DKHMNLIL DC+EFRK+ K +R KR LG VLLRGEN+VS+T+EGP
Sbjct: 31 FKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGP 85
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLK 608
FKA DKHMN+I DC+EFRK+ LK
Sbjct: 71 FKAFDKHMNMIPCDCDEFRKMKLK 94
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 41.5 bits (93), Expect = 0.003
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = -3
Query: 679 FKAXDKHMNLILGDCEEFRKLNLK 608
FKA DKHMN+I DC+EFRK+ LK
Sbjct: 71 FKAFDKHMNMIPCDCDEFRKMKLK 94
>X58233-1|CAA41191.1| 50|Homo sapiens 36/8-3 fusion protein with
epitope for anti-lectin antibody protein.
Length = 50
Score = 33.5 bits (73), Expect = 0.82
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 352 RKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSW 248
R+ WS SS+ A RPH GW S + G S+ W
Sbjct: 1 RRRWSG-ASSAPAVRPHQGWSQSSHRGDSAHQSPW 34
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 31.1 bits (67), Expect = 4.4
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = -3
Query: 667 DKHMNLILGDCEEFRKLNLKIVNCRQRRKRTLGFVLLRGENIVSL 533
D++MNL+L D EE ++ + + ++ LG ++L+G+NI L
Sbjct: 51 DEYMNLVLDDAEE--------IHSKTKSRKQLGRIMLKGDNITLL 87
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 31.1 bits (67), Expect = 4.4
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = -3
Query: 667 DKHMNLILGDCEEFRKLNLKIVNCRQRRKRTLGFVLLRGENIVSL 533
D++MNL+L D EE ++ + + ++ LG ++L+G+NI L
Sbjct: 51 DEYMNLVLDDAEE--------IHSKTKSRKQLGRIMLKGDNITLL 87
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 31.1 bits (67), Expect = 4.4
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = -3
Query: 667 DKHMNLILGDCEEFRKLNLKIVNCRQRRKRTLGFVLLRGENIVSL 533
D++MNL+L D EE ++ + + ++ LG ++L+G+NI L
Sbjct: 51 DEYMNLVLDDAEE--------IHSKTKSRKQLGRIMLKGDNITLL 87
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 31.1 bits (67), Expect = 4.4
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = -3
Query: 667 DKHMNLILGDCEEFRKLNLKIVNCRQRRKRTLGFVLLRGENIVSL 533
D++MNL+L D EE ++ + + ++ LG ++L+G+NI L
Sbjct: 40 DEYMNLVLDDAEE--------IHSKTKSRKQLGRIMLKGDNITLL 76
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 31.1 bits (67), Expect = 4.4
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = -3
Query: 667 DKHMNLILGDCEEFRKLNLKIVNCRQRRKRTLGFVLLRGENIVSL 533
D++MNL+L D EE ++ + + ++ LG ++L+G+NI L
Sbjct: 51 DEYMNLVLDDAEE--------IHSKTKSRKQLGRIMLKGDNITLL 87
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 31.1 bits (67), Expect = 4.4
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = -3
Query: 667 DKHMNLILGDCEEFRKLNLKIVNCRQRRKRTLGFVLLRGENIVSL 533
D++MNL+L D EE ++ + + ++ LG ++L+G+NI L
Sbjct: 51 DEYMNLVLDDAEE--------IHSKTKSRKQLGRIMLKGDNITLL 87
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 31.1 bits (67), Expect = 4.4
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = -3
Query: 667 DKHMNLILGDCEEFRKLNLKIVNCRQRRKRTLGFVLLRGENIVSL 533
D++MNL+L D EE ++ + + ++ LG ++L+G+NI L
Sbjct: 51 DEYMNLVLDDAEE--------IHSKTKSRKQLGRIMLKGDNITLL 87
>AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ46261 fis, clone TESTI4025062. ).
Length = 280
Score = 30.7 bits (66), Expect = 5.8
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 364 THGTRKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWWARTGSSRNAT 215
THG + ST CS ++ S R+ G+SS SWW+ SS + +
Sbjct: 5 THGMHLTSSTSCSCQSSGTSFTSC-SCRSSGTSSTSRSWWSSGTSSTSCS 53
>AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ43836 fis, clone TESTI4005857. ).
Length = 280
Score = 30.7 bits (66), Expect = 5.8
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 364 THGTRKSWSTFCSSSNARRPHDGWPSSRNDGSSSWHGSWWARTGSSRNAT 215
THG + ST CS ++ S R+ G+SS SWW+ SS + +
Sbjct: 5 THGMHLTSSTSCSCQSSGTSFTSC-SCRSSGTSSTSRSWWSSGTSSTSCS 53
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,024,344
Number of Sequences: 237096
Number of extensions: 1562087
Number of successful extensions: 4016
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 3840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3991
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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