Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_P06
         (989 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   0.48 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   0.79 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   1.4  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.4  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect(2) = 0.48
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 501 PXXXPPPPPPP 533
           P   PPPPPPP
Sbjct: 942 PAFPPPPPPPP 952



 Score = 23.0 bits (47), Expect(2) = 0.48
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 516 PPPPPPXXP 542
           PPPPPP  P
Sbjct: 945 PPPPPPPPP 953



 Score = 23.0 bits (47), Expect(2) = 3.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 565 PPPXPPTPP 591
           PPP PP PP
Sbjct: 945 PPPPPPPPP 953



 Score = 22.2 bits (45), Expect(2) = 3.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 550 PXXPXPPPXPP 582
           P  P PPP PP
Sbjct: 942 PAFPPPPPPPP 952


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect(2) = 0.79
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 501 PXXXPPPPPPP 533
           P   PPPPPPP
Sbjct: 5   PPGNPPPPPPP 15



 Score = 25.4 bits (53), Expect(2) = 1.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 501 PXXXPPPPPPP 533
           P   PPPPPPP
Sbjct: 6   PGNPPPPPPPP 16



 Score = 22.2 bits (45), Expect(2) = 0.79
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 513 PPPPPPPXXP 542
           PPPPPP   P
Sbjct: 11  PPPPPPGFEP 20



 Score = 21.4 bits (43), Expect(2) = 1.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 516 PPPPPPXXPXXP 551
           PPPPPP     P
Sbjct: 9   PPPPPPPPGFEP 20


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 30/159 (18%), Positives = 35/159 (22%), Gaps = 1/159 (0%)
 Frame = +1

Query: 166 PPXTPXTXPXXPXXXXQXKKKXPXXXPXXXXXRXXXXPAPPXXXTKKXXKXKKKLWPXXX 345
           PP +       P          P   P          P PP   +       +   P   
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSA-PSTG 373

Query: 346 XXPPPXXXTXRGPXPPXXXNTNPXXX-PKXXXXXXXXXXXXPHXKTPXPPXTXPXXXXXX 522
             PPP   +     PP      P    P             P    P PP   P      
Sbjct: 374 RQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTP--PVPTPPSLPPSAPPSL 431

Query: 523 XXXXXXXXXPXXPXPPPXPPTPPXTXXXPXXXXPXXPXP 639
                       P  PP PP+ P     P       P P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.8 bits (49), Expect(2) = 1.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 513 PPPPPPP 533
           PPPPPPP
Sbjct: 761 PPPPPPP 767



 Score = 23.0 bits (47), Expect(2) = 1.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 516 PPPPPPXXP 542
           PPPPPP  P
Sbjct: 775 PPPPPPPPP 783


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 501 PXXXPPPPPPPXXP 542
           P   PPPPPPP  P
Sbjct: 234 PLPAPPPPPPPTLP 247



 Score = 23.8 bits (49), Expect(2) = 3.0
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 501 PXXXPPPPPPPXXP 542
           P    PPPPPP  P
Sbjct: 184 PSDYNPPPPPPPPP 197



 Score = 21.8 bits (44), Expect(2) = 3.0
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 516 PPPPPPXXPXXP 551
           P PPPP  P  P
Sbjct: 236 PAPPPPPPPTLP 247


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -1

Query: 623 GXXXXGXXXVXGGVGGXGGGXGXXG 549
           G    G     GG+GG GGG G  G
Sbjct: 238 GGFGGGPGGFGGGLGGFGGGPGGFG 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.304    0.136    0.478 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,249,078
Number of Sequences: 5004
Number of extensions: 14090
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)