Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_P05
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 32 0.46
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 31 1.4
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.4
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 2.5
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.3
11_06_0610 - 25449085-25453284 29 4.3
07_03_0846 - 21983581-21986055 29 4.3
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 29 5.7
03_05_1166 - 30876802-30876899,30877233-30878685 28 7.6
03_01_0515 - 3864796-3865425 28 10.0
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 32.3 bits (70), Expect = 0.46
Identities = 18/62 (29%), Positives = 19/62 (30%)
Frame = +3
Query: 606 PTPXXTKKXXPXXTLXLPPSXAXPRXXPXPGPPXXXKLXPXPQGSKRXXAXXRPPTGXGK 785
P P P +PP A P P P PP K P P K P
Sbjct: 560 PPPIPKLLSPPAPQAPMPPLKASPVPPPEPSPPPAPKAAPPPPPPKSTGPGPPRPPPPAM 619
Query: 786 PG 791
PG
Sbjct: 620 PG 621
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/73 (27%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Frame = +3
Query: 579 FGSPMNRXTPTPXXTKKXXPXXTLXLPPSXAXP---RXXPXPGPPXXXKLXPXPQGSKRX 749
FG P P ++ PPS A P + P GPP P P G
Sbjct: 97 FGGPPGVMPSQPLQQQQQQQRPAFGGPPSGAPPAQAQRTPFGGPPSAMSQGPLPFGGPPA 156
Query: 750 XAXXRPPTGXGKP 788
+PP G P
Sbjct: 157 AVASQPPPFGGPP 169
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.7 bits (66), Expect = 1.4
Identities = 25/78 (32%), Positives = 25/78 (32%), Gaps = 1/78 (1%)
Frame = +3
Query: 561 SKARAXFGSPMNRXTPTPXXTKKXXPXXTLXLPPSXAXPRXXP-XPGPPXXXKLXPXPQG 737
S A A SP P P P PP A P P P PP K P P
Sbjct: 302 SIAAAAVASPAPPPPPPPKPAAAAPPPPP---PPKAAPPPPPPKGPPPPPPAKGPPPPPP 358
Query: 738 SKRXXAXXRPPTGXGKPG 791
K PP G K G
Sbjct: 359 PKGPSPPPPPPPGGKKGG 376
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Frame = +3
Query: 588 PMNRXTPTPXXTKKXXPXXTLXLPPSXAXPRXX--PXPGPPXXXKLXPXPQGSKRXXAXX 761
P + P P K P PP P+ P P PP K P P K +
Sbjct: 330 PPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGAS-- 387
Query: 762 RPPTGXGKP 788
RPP G P
Sbjct: 388 RPPAAPGVP 396
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Frame = +3
Query: 588 PMNRXTPTPXXTKKXXPXXTLXLPPSXAXPRXXPXPGPPXXXK-LXPXPQGSKRXXAXXR 764
P P P K P PP + P P PP P P G K+
Sbjct: 321 PAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPP 380
Query: 765 PPTG 776
PP G
Sbjct: 381 PPKG 384
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/80 (22%), Positives = 23/80 (28%)
Frame = +3
Query: 549 RGDPSKARAXFGSPMNRXTPTPXXTKKXXPXXTLXLPPSXAXPRXXPXPGPPXXXKLXPX 728
R PS A A P + P + P + + P P PP P
Sbjct: 268 RSSPSPAPAPAARPASPSPSLPLPPGRESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPP 327
Query: 729 PQGSKRXXAXXRPPTGXGKP 788
P + PP G P
Sbjct: 328 PPPPPKAAPPPPPPKGPPPP 347
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.9 bits (64), Expect = 2.5
Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Frame = +3
Query: 585 SPMNRXTPTPXXT-KKXXPXXTLXLPPSXAXPRXXPXPGPPXXXKLXPXPQGSKRXXAXX 761
SP +R P+P T P PPS P P P PP P PQ +
Sbjct: 528 SPSDRKLPSPSPTAAAPPPPPPPPPPPSGNKPAFSPPPPPPPPPP-PPLPQSNYASSQPP 586
Query: 762 RPP 770
PP
Sbjct: 587 PPP 589
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = +3
Query: 606 PTPXXTKKXXPXXTLXLPPSXAXPRXXPXPGPPXXXKLXPXPQGSKRXXAXXRPP-TGXG 782
P P T K P P + P P P P P P SK A PP G G
Sbjct: 752 PPPLMTGKKAPAPPPPPPQAPKPPGTVPPPPPLHGASGRPHPPSSKGLNAPAPPPLLGRG 811
Query: 783 K 785
+
Sbjct: 812 R 812
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 431 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 333
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Frame = +3
Query: 609 TPXXTKKXXPXXTLXLPPSXAXPRXXPXP--GPPXXXKLXPXP 731
+P K P T+ LPP P P P PP K P P
Sbjct: 1113 SPPTEKSLPPPATVSLPPPTVKPLPPPVPVSSPPPPEKSPPPP 1155
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 202 DLRDPNGLRRRVSRFECETRLVKSHXLEPPDSRGSTVSISLPDSARLASA 351
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 76 PSTTPRQERKSXTDYSEPRHRTELYPDLRSRDARVKKK 189
PS TP ER +D PR Y R+RD K+
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQ 402
>03_05_1166 - 30876802-30876899,30877233-30878685
Length = 516
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 657 PPSXAXPRXXPXPGPPXXXKLXPXPQG 737
P S + P P P PP K+ P P G
Sbjct: 215 PKSSSPPTLLPPPPPPPREKMYPNPSG 241
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/56 (32%), Positives = 20/56 (35%)
Frame = +3
Query: 564 KARAXFGSPMNRXTPTPXXTKKXXPXXTLXLPPSXAXPRXXPXPGPPXXXKLXPXP 731
+A A SP +P P P T PP A P P P PP P P
Sbjct: 34 EAEASPPSPPTEASPPPLAPP---PSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPP 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,813,647
Number of Sequences: 37544
Number of extensions: 412682
Number of successful extensions: 1251
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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