Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_P03
         (987 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    31   0.33 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.4  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 532 PAPXRKPRXXHRXPPPXXRXDXXPSTPP 615
           P P   P   H  PPP  R    PS PP
Sbjct: 732 PTPAPTPAVKHHPPPPPVRSSISPSMPP 759


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 561 PPTXAPPXPXXPPXKHPXXPP 623
           PPT APP P  PP      PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPP 159


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = -1

Query: 969 GFXXFGGGXXXAXARXGXGGGXFXGXXAXGXRXFGLGXXXFSGG 838
           GF  FGG         G GGG   G    G   FG G   F GG
Sbjct: 209 GFGGFGGEGHHHGGHGGFGGG--PGGFEGGPGGFGGGPGGFGGG 250


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +2

Query: 836  PPPEKXXXPXPNXRXPXAXXPXXXPPPXPXRAXAXHXPPP 955
            PPP     P P    P    P   PPP    + A   P P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/51 (27%), Positives = 15/51 (29%)
 Frame = +3

Query: 471  PXTTXPKXPXXXXXXXXXXXXXXXXETXXXPPTXAPPXPXXPPXKHPXXPP 623
            P +T P  P                     PP  APP P  PP   P   P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
 Frame = +2

Query: 836 PPPEKXXXPXPNXRX----PXAXXPXXXPPPXPXRAXAXHXPPPKXXNP 970
           PPP     P P        P A      PPP P    A   PPP    P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.136    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,470,135
Number of Sequences: 5004
Number of extensions: 14787
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)