Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_P02
         (1030 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.1  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    27   5.7  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 384 PGXXPPPXPPXXNXXPQXXXPXPP 455
           PG  PPP PP     P    P PP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 384 PGXXPPPXPPXXNXXPQXXXPXPP 455
           P   PPP PP     P    P PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +3

Query: 396 PPPXPPXXNXXPQXXXPXPPTTXQHXRTP 482
           PPP PP  N  P      PP   Q    P
Sbjct: 206 PPPPPPQQNYPPAASSSAPPMQYQQTAYP 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.129    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 990,511
Number of Sequences: 5004
Number of extensions: 7744
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 537243034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)