Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_P02
(1030 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 32 0.64
04_04_1125 + 31085106-31085714 31 2.0
03_01_0515 - 3864796-3865425 30 2.6
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 29 4.5
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 29 4.5
04_03_0904 + 20717005-20718087 29 4.5
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 4.5
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 4.5
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 29 7.9
08_01_0134 + 1067826-1068158 29 7.9
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 24 8.2
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 32.3 bits (70), Expect = 0.64
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 378 PXPGXXPPPXPPXXNXXPQXXXPXPP 455
P P PPP PP N P+ P PP
Sbjct: 354 PPPPPPPPPPPPKLNTAPKPPPPPPP 379
>04_04_1125 + 31085106-31085714
Length = 202
Score = 30.7 bits (66), Expect = 2.0
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +2
Query: 377 PXAGXPTTPPXP-XXEPXTPXPXTXTP 454
P PTTPP P P TP P T TP
Sbjct: 51 PTPATPTTPPTPWTPPPATPTPPTPTP 77
>03_01_0515 - 3864796-3865425
Length = 209
Score = 30.3 bits (65), Expect = 2.6
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +3
Query: 378 PXPGXXPPPXPPXXNXXPQXXXPXPPTTXQHXRTP 482
P P PPP PP + P P PP+ + P
Sbjct: 84 PPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSPPP 118
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 29.5 bits (63), Expect = 4.5
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = +3
Query: 378 PXPGXXPPP-XPPXXNXXPQXXXPXPPTTXQHXR 476
P P PPP PP PQ P PP Q R
Sbjct: 58 PKPSPTPPPASPPPAPTPPQTRPPSPPPQQQQPR 91
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 378 PXPGXXPPPXPPXXNXXPQXXXPXPPTTXQH 470
P P PPP PP + Q P PP +H
Sbjct: 761 PLPLPLPPPPPPPFSVQQQQLPPPPPYHLRH 791
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.5 bits (63), Expect = 4.5
Identities = 25/99 (25%), Positives = 27/99 (27%), Gaps = 4/99 (4%)
Frame = +3
Query: 171 PTPXXQXTXXPTXTXQXXTPXSPXXTNXPTTXXPKEREXQPHXXKXXXXXXXXXXXXXXX 350
PT Q PT P T PT P + P K
Sbjct: 259 PTYKPQPKPTPTPYTPPTYKPQPKPTPTPTPYTPTPKPNPPPTYKPQPKPTPTPTPYKPQ 318
Query: 351 XXTTXGXLTPXPGXXPP---PXP-PXXNXXPQXXXPXPP 455
T TP P PP P P P + P P PP
Sbjct: 319 PKPTPSPYTPKPTPTPPTYTPTPTPPYHKPPPSYTPGPP 357
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 378 PXPGXXPPPXPPXXNXXPQXXXPXPPTT 461
P G PPP PP P P PP T
Sbjct: 299 PVGGTQPPPPPPPLANGPPRSIPPPPMT 326
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 372 LTPXPGXXPPPXPPXXNXXPQXXXPXPP 455
L P P PPP PP P P PP
Sbjct: 351 LMPPPPPPPPPPPPPPPPPPPRPPPPPP 378
Score = 29.5 bits (63), Expect = 4.5
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 372 LTPXPGXXPPPXPPXXNXXPQXXXPXPP 455
+ P P PPP PP P+ P PP
Sbjct: 352 MPPPPPPPPPPPPPPPPPPPRPPPPPPP 379
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 28.7 bits (61), Expect = 7.9
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 378 PXPGXXPPPXPPXXNXXPQXXXPXPP 455
P P PPP PP P P PP
Sbjct: 429 PLPPPPPPPPPPPPPLPPNMPPPLPP 454
>08_01_0134 + 1067826-1068158
Length = 110
Score = 28.7 bits (61), Expect = 7.9
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +3
Query: 378 PXPGXXPPPXPPXXNXXPQXXXPXPPTTXQ 467
P P PPP PP P P P + Q
Sbjct: 4 PLPSSRPPPPPPLPRPHPAPPPPCPAASLQ 33
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 23.8 bits (49), Expect(2) = 8.2
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = +3
Query: 396 PPPXPPXXNXXPQXXXPXPP 455
PPP PP N P PP
Sbjct: 714 PPPPPPPANRSNGPSAPAPP 733
Score = 23.0 bits (47), Expect(2) = 8.2
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +3
Query: 357 TTXGXLTPXPGXXPPPXPP 413
T G T G PPP PP
Sbjct: 678 TPTGAATSSKGPPPPPPPP 696
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.129 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,545,465
Number of Sequences: 37544
Number of extensions: 105444
Number of successful extensions: 1439
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3024393764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -