Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_P01
         (916 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    31   1.1  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    31   1.1  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    31   1.1  

>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 26/102 (25%), Positives = 30/102 (29%), Gaps = 2/102 (1%)
 Frame = +3

Query: 600 PPTPXPTXQXXXXNPDXHXXXXNPXXX--PPPTXXGXEPPHXPAQTDRXXXXXXPPPTP* 773
           P TP PT +              P     PPPT     PP   A          PP T  
Sbjct: 155 PVTPEPTVKNTTAAEPTTEAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTNK 214

Query: 774 XAGEXAAXTRXEPRGXAQXXNPRPXXPTXKGXTTRQPRAGXP 899
                A   +  P        P P   T K  TT+  +A  P
Sbjct: 215 EVTTVAPVPKPAPVTAPAPNPPAPENTTAKVETTKPTKAAPP 256


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/91 (23%), Positives = 26/91 (28%)
 Frame = +1

Query: 586 PAXXIPQHPXPPXRXXXXTXTNTXPXQTXXXTPHXXRXGXNHPTXQPKQTXXXXXAGRPP 765
           P    P  P PP        + + P      +P   R G + P             G PP
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTG-SPPPPPTGSPPPPPAGGSPP 290

Query: 766 PPEXQAXXXPXPARNRXGXRXQXTPAXGXQP 858
           PP   +   P P R          P  G  P
Sbjct: 291 PPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 321


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/91 (23%), Positives = 26/91 (28%)
 Frame = +1

Query: 586 PAXXIPQHPXPPXRXXXXTXTNTXPXQTXXXTPHXXRXGXNHPTXQPKQTXXXXXAGRPP 765
           P    P  P PP        + + P      +P   R G + P             G PP
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTG-SPPPPPTGSPPPPPAGGSPP 311

Query: 766 PPEXQAXXXPXPARNRXGXRXQXTPAXGXQP 858
           PP   +   P P R          P  G  P
Sbjct: 312 PPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 342


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/91 (23%), Positives = 26/91 (28%)
 Frame = +1

Query: 586 PAXXIPQHPXPPXRXXXXTXTNTXPXQTXXXTPHXXRXGXNHPTXQPKQTXXXXXAGRPP 765
           P    P  P PP        + + P      +P   R G + P             G PP
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTG-SPPPPPTGSPPPPPAGGSPP 296

Query: 766 PPEXQAXXXPXPARNRXGXRXQXTPAXGXQP 858
           PP   +   P P R          P  G  P
Sbjct: 297 PPRAGSPPPPPPPRGSPPTGSLPPPQAGGSP 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,787,647
Number of Sequences: 27780
Number of extensions: 234443
Number of successful extensions: 615
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)