Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_O24
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0302 - 2286171-2286341,2286747-2286968                           29   4.2  
02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123     29   4.2  
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238...    29   5.5  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    29   5.5  
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511...    28   7.3  
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648...    28   9.6  
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937...    28   9.6  

>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 86  RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 187
           RL+R RK +  D+   G  + +GEKLE  + +E+
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90


>02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123
          Length = 422

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -1

Query: 385 PQTKPSSTINSKSPIII**LIRNWPSRFLLS*APESTSSIPLATFQLLPSIPYCTTTSGR 206
           P  K      ++SPII     R  P +FL+   P S  S   +  +LLPS P+  +  G+
Sbjct: 260 PSKKQKRFYKTRSPIIA----RQTPHKFLVKSPPSSLGSKLKSHGKLLPSRPFTVSPPGK 315


>09_04_0737 -
           19822822-19822973,19823069-19823135,19823666-19823822,
           19824003-19824177,19824364-19824481,19824676-19824874,
           19824983-19825062,19825141-19825257,19825791-19825961,
           19826121-19826597
          Length = 570

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 78  FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 224
           F+VD  G G +  ++++LAV+ G R      CR     VV     DVVV
Sbjct: 93  FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -3

Query: 245  PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 66
            P F T+LY     ++KD      S+     L S+  Y  L+DP   S D+    + +   
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407

Query: 65   ILHSF 51
            +LHSF
Sbjct: 1408 LLHSF 1412


>01_01_0668 -
           5109476-5110112,5110196-5110439,5110519-5110917,
           5111390-5111668,5111886-5112257,5112371-5112475,
           5112832-5112909,5112990-5113199,5113287-5113406,
           5113508-5113606,5113685-5113750,5113914-5114141,
           5114216-5114521,5115324-5115381
          Length = 1066

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 436 YSAPP-LQLTPSSKTSSWPQTKPSSTINSKSPII 338
           Y+APP ++LTP + T   P   P + + + +P++
Sbjct: 123 YNAPPPVELTPPAPTHVAPVAPPQAAVENPAPVL 156


>03_06_0030 +
           31161821-31161927,31163700-31163934,31164064-31164826,
           31165816-31167650,31169294-31169424,31169993-31170075,
           31170426-31170680,31171125-31171220,31171695-31171775,
           31171811-31171968,31172434-31172534,31172614-31172629,
           31173390-31173439,31174558-31174588,31175156-31175305,
           31176135-31176173,31176288-31176410,31176496-31176552,
           31176837-31176911,31177003-31177107
          Length = 1496

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 424 PLQLTPSSKTSSWPQTKPSSTINSKSPIII**LIRNWPSRFL 299
           P QL P+    SWP   P  +I  K   I    + N P +FL
Sbjct: 152 PSQLPPNGAKMSWPIQTPPMSITYKKASIAEHGVMNHPLKFL 193


>02_02_0718 -
           13290764-13290897,13292375-13293041,13293364-13293719,
           13294559-13294629,13295326-13295336
          Length = 412

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 446 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 357
           +P++L+SPP T+  IED    +  + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,656,503
Number of Sequences: 37544
Number of extensions: 307037
Number of successful extensions: 869
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)