Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_O20
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.11
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 31 0.19
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 2.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 5.4
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 26 7.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 7.2
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.11
Identities = 29/134 (21%), Positives = 40/134 (29%), Gaps = 6/134 (4%)
Frame = +2
Query: 374 PPXXPPXPXPXPPXXAATXPGGXXPVXXXXGSHTVPLP--XSSXIXRXN---PXXLAXLX 538
P PP P P + P G PV G VP P + + + + P A
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSG 1119
Query: 539 A-XXPRPXPGXPXRXXXTXXXPLPRPPTXXXPRXLPXXQPGXXXXPXXPXXXPTRAXTXP 715
A P+P P + P+P+P P P P P + P
Sbjct: 1120 APPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP 1179
Query: 716 XTXXXXXXXPXLSP 757
P + P
Sbjct: 1180 PVPKPAAGVPPVPP 1193
Score = 28.3 bits (60), Expect = 1.3
Identities = 24/94 (25%), Positives = 32/94 (34%)
Frame = +2
Query: 374 PPXXPPXPXPXPPXXAATXPGGXXPVXXXXGSHTVPLPXSSXIXRXNPXXLAXLXAXXPR 553
PP P P P + P PV G+ VP P S P + + P+
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAP----PVPAPSGAPPVPKP--SVAAPPVPAPSSGIPPV-PK 1183
Query: 554 PXPGXPXRXXXTXXXPLPRPPTXXXPRXLPXXQP 655
P G P + P+P+P P P P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
Score = 25.8 bits (54), Expect = 7.2
Identities = 23/97 (23%), Positives = 28/97 (28%), Gaps = 7/97 (7%)
Frame = +2
Query: 374 PPXXPPXPXPXPPXXAATXPGGXXPVXXXX-GSHTVPLPXSSX------IXRXNPXXLAX 532
P PP P P P G PV + VP P S P
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPS 1195
Query: 533 LXAXXPRPXPGXPXRXXXTXXXPLPRPPTXXXPRXLP 643
P+P G P + P+P P P +P
Sbjct: 1196 EAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 31.1 bits (67), Expect = 0.19
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Frame = -2
Query: 348 SXGRRAPPPP-----LRSLISNLSNTCDLTPLPEWSCEQSAW 238
S GR PPP +RS+ L D+TP+ +W ++S W
Sbjct: 94 SVGRSRSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 2.4
Identities = 24/102 (23%), Positives = 28/102 (27%)
Frame = +2
Query: 377 PXXPPXPXPXPPXXAATXPGGXXPVXXXXGSHTVPLPXSSXIXRXNPXXLAXLXAXXPRP 556
P P PP T P + +P +S P A P P
Sbjct: 451 PALSMNPSSLPPWQQPTQQSAVQPSNLVPSQNAPFIPGTSA--PLPPTTFAPPGVPLP-P 507
Query: 557 XPGXPXRXXXTXXXPLPRPPTXXXPRXLPXXQPGXXXXPXXP 682
PG P P PP P +P PG P P
Sbjct: 508 IPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMP 549
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Frame = +3
Query: 582 SXRSXXPFPAXQLPVPXXXCPXSNPGXPXCQXXLXXS-----PPGPPPXPXP 722
S S P P+ P+P P + P P S PP PP P P
Sbjct: 153 SPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 5.4
Identities = 25/108 (23%), Positives = 28/108 (25%)
Frame = +2
Query: 386 PPXPXPXPPXXAATXPGGXXPVXXXXGSHTVPLPXSSXIXRXNPXXLAXLXAXXPRPXPG 565
PP P P PP P V P L A P P P
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVS---PEIPPTYTPKQADPLPAPPPPPPPT 245
Query: 566 XPXRXXXTXXXPLPRPPTXXXPRXLPXXQPGXXXXPXXPXXXPTRAXT 709
P + T P+P + P P P PT A T
Sbjct: 246 LPPQSTNTSQLPMPSRNVNNLGSQVNIPPP--PATPSQPPRPPTNAST 291
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 327 PPPLRSLISNLSNTCDLTPLPEW 259
P P+ S ++N +L PLPEW
Sbjct: 10 PKPMDSSHIKVTNVKELKPLPEW 32
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +3
Query: 600 PFPAXQLPVPXXXCPXSNPGXPXCQXXLXXSPPGPPPXPXP 722
P PA +PVP P P + + P PPP P P
Sbjct: 744 PAPAP-IPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,997
Number of Sequences: 5004
Number of extensions: 22824
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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