Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_O13
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.67 
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    28   1.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.7  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    26   4.7  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   6.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.3  

>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -2

Query: 477 PQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKS 301
           P +KK TLDD D P+ S   D       S +         ++E +    N+ +S P  S
Sbjct: 94  PSKKKATLDDWDIPTSSTETDTISTTHTSYIPTLLAKQEENEETKETTTNKNESLPGTS 152


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
 Frame = -2

Query: 486 SIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQT---QS 316
           SI  +     L+     S++   +  P+  A +  P     ++  E  A+ N  T   + 
Sbjct: 552 SISSRLPSSNLEQGSSSSVTKSPESMPDPSAKASSPVTSKGVSINEKSAVNNYATPLSKP 611

Query: 315 QPKKSQRSM--EAFPALSATAHSPAAPP 238
           QPK ++ S     F A S  A  PA+PP
Sbjct: 612 QPKDTKGSKLGNTFVAPSPAASLPASPP 639


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
 Frame = -2

Query: 579  RNXKPSVSIQXHSQPASXSNFR--LTQTSGNRISIPPQQKKPTLDDDDFPS-LSMGRDDH 409
            +N    V ++ ++  AS       L     N  S+  + +K   ++DD  S LS+   ++
Sbjct: 996  KNKVSEVEVERNALLASNERLMDDLKNNGENIASLQTEIEKKRAENDDLQSKLSVVSSEY 1055

Query: 408  PNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKSQRSME 286
             N+   S Q  K     + +++ ++ N  +   +K QR++E
Sbjct: 1056 ENLLLISSQTNKSLEDKTNQLKYIEKNVQKLLDEKDQRNVE 1096


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 360 NSQEMQALKNNQTQ--SQPKKSQRSMEAFPALSATAHSPAAPPQWIT 226
           + QE+ ++  N+ Q  S P     S+E   +L+A AH+P     W T
Sbjct: 304 DEQEVSSMMGNRWQHSSTPASLFNSVERNNSLTAVAHNPPGSIGWQT 350


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 516 RLTQTSGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNI 400
           R  +T+ +R + PPQ +    +D+D    S   DD P I
Sbjct: 110 RRRKTNNDRRNYPPQNRTAKPNDNDGDDYSFFEDDLPVI 148


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -2

Query: 303 SQRSMEAFPALSATAHSPAAPPQWITVS 220
           S R  E  P+LSA A  P  PP   TVS
Sbjct: 238 SSRPPERVPSLSAPAPPPIPPPSNGTVS 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,292,303
Number of Sequences: 5004
Number of extensions: 40661
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)